Pro Res 422 Project Stalls Compressor & Matrox

Gurus, stuck on this one. FCP7.0.3 project with a series of clips edited into a 18 tracks from 90-seconds to 8/9-minutes. No big - just cleaned them up. The Inspector shows the clips to be "Apple Pro Res 422, 12800x720, 60fps, 141.86 MB/sec (lovely HD TV) and the Browser confirms (although the data rate does not show), and Pixel Aspect is Square. Dense, but good. 
When sent to Compressor 3.5.3 to encode to Best Quality (2-pass) DVD, Compressor wants an probhibitively long amount of time, like two days. This on a MacPro eight-core. More specifically, a 90-second track would take Compressor better than an hour.
When sent to Compressor using the Matrox MX02 with MAX H.264 hardware accelerator the same thing occured. It wanted 18+ hours to encode on the Mac Pro 8-core.
It feels like there is a hidden process occuring -- some sort of other conversion that I just do not see. Adivce?

Michael amd Shane, using Michael's advice to Export as a self-contained movie, I took a 1:53 1280 x 720, 60fps track in the Project and it made a nice 1.85 GB clip, which I then brought onto Compressor. I applied the Best quality DVD 2-pass, and it made the m2V file in elapsed time of 1:35 on the whiz bang MacBook Pro 4 core. Have not tried H264 yet. But here's an unusual thing I've discovered -- most likely the cuase of this hang-up:
I went back to the FCP Project and transferred this same 1:53 track my usual way -- highlight the Sequence in the Browser, Control-Click, Send To Compressor -- and when it arrived in Compressor, the timing or the time code in the Preview screen hs a start time of 16:00:00:00 and an end time of 23:23:20:03 showing a duration of 07:23:20:04 on the same 1-minute-53-second clip. I have no idea why. Any guesses?

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    Message was edited by: Trancepriest
    Message was edited by: Trancepriest

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