Problem deleting old library structure

I switched from Aperture 1.0 to Adobe Bridge. I found it much easier to work with, particularly organizing my workflow. After reading the great reviews of Aperture 2.0 I purchased the upgrade and switched back. I downloaded the upgrade and am now on 2.1. My problem is when I try to import photos, Aperture is still seeing the folder structure in Finder from a year ago which is totally different than my current folders. Of course since the photos are no longer there I get an error message. How do I get Aperture to recognize my current folders? Any assistance would be greatly appreciated. I went through the tutorials, but could not find anything that helped.
Thank you.

When you Import folders into a project, you can't choose individual images but just the folder that contains the images. Sub Folders come along and become albums or subfolders depending on if they contain other folders. It should import the file structure on your hard drive not an old file structure from Aperture.
AppZapper will wipe all remnants of an Application from your computer but not the files. Just download the trial and drag the application on top of it.
Manually:
Move these files to the trash, but don't empty it yet.
The Application itself
Root (not User)>> Library>> Application Support >> ProApps>> Aperture System ID
User>> Library>> Preferences >> com.apple.Aperture.plist
User>> Library>> Application Support >> Aperture
Then reinstall. You'll be asked to enter your serial number. On an Upgrade version, it may ask for the Aperture 1.0 serial number as well so have it handy,
DLS
Message was edited by: MacDLS added more info

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