Problem when stopping scrolling in Safari 6.0, Mountain Lion

Hi,
I have an early 2011 Macbook Pro, which I bought recently as a refurbished model from Apple directly a couple of months ago.
It has been excellent, however since I updated to Mountain Lion, My Safari has been acting strange.
If I scroll a website using the trackpad, and stop the scroll suddently using the trackpad, before the screen comes to a halt, I get a strange 'shuddering' or 'wobble' effect on the screen for a split second, that is very annoying, and I am sure it's not intentional.
Does anyone know what this could be?
Thanks in advance.
Peter C
SOLVED:
For what its's worth if anyone has this problem, the issue was with another program I had open called 'Magician File' which is file explorer type app, when it was loaded, it was causing my scrolling issues with Safari for some reason. Thanks.

Please use the Export as HTML feature to export the site to an _empty_ local folder. I'm confident the anchor links will work fine on that locally exported version.
The challenge is the files being generated by Muse are not what's on your server. If you upload the complete contents of the local export folder to a new subfolder on your server, all will work fine (assuming all the files and folders make it to the server).
I'm baffled as to why Upload to FTP Host would apparently fail with no error messages, if the Upload: All Files option was specified and the target FTP server and directory/folder were correct...
When you manually upload, what FTP client are you using?

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