Problem with ABBYY FineReader or Adobe?

Dear all,
A large number of our customers send us their texts in PDF format. Some of these texts can not be saved as a Word file, hence we process them through ABBYY FineReader 9.0 Professional Edition. Somehow the word count (often that is the way the project price is calculated in our industry) differs slightly from time to time when processing the same file. Does anybody else recognize this problem? Is ABBYY or Adobe responsible for this mishap? If so, does anybody have a solution?
Thanks in advance!
Sincerely yours,
H. van Dort
House of Words (translation services)
http://www.houseofwords.nl

<moved from Downloading, Installing, Setting Up to Flex>

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