Problem with backing up to external hard drive and then " recovering " files, apps etc.

Hi there,
I hope you can help me please, I have messed some things up from not knowing what I was doing : ( and would like to fix them if possible.
I will try to be brief and concise. Here goes....
1. My 2006 iMac 4 running Leopard OSX was starting to run very slowly. My hard drive had 232 GB of which 220 GB were being used. The thing using most space was iPhoto, over 60 GB of photos.
2. I downloaded Mackeeper and ran their cleaning program, getting rid of duplicate files, clearing caches etc. but it didn't release much extra space, just a couple of gigs.
3. I read an article from Maclife " 25 ways to speed up your Mac ". One of the tips was to reinstall the operating system which I did, using the " archive and install " instruction.
4. I now have Leopard OS under a new account name which is running faster but I cannot access various apps such as iPhoto, Photoshop CS4, Keynote, Pages etc.
5. Everything prior to me messing around is now in a folder called " previous system ".
6. I realize now that I should have first bought a new external hard drive, which I now have done ; an Iomega 500 GB with USB 2.0 and that I should have backed up everything first before messing around. Hindsight is a great thing.
7. Having connected the ext. hard drive, I was looking for info on what I should do next when Time Machine kicked in and automatically started copying everything, without me having to do anything such as formatting etc.
8. Everything that was on the hard drive ( 220 GBs ) has been copied to the ext. HD so I hope I haven't lost anything, especially my photos on iPhoto and CS4.
9. Other 3rd party apps haven't been effected but now I would like to integrate everything back into one seamless, quick flowing system.
10. How can I do this ?
Any advice or help would be appreciated.
Thanks, Sean.

UPDATE : I have re-installed from disk, various apps that were no longer functioning such as iLife, iWork etc. So, I now can access my photos again.
Also, I had to re-install all the software for my printer ( Stylus Pro 4880 ) and reset it so the printer is working again.
Photoshop CS4 won't open. I think I will have to get in touch with Adobe as basically, I guess they have a built-in "blocker" which prevents me from opening the app as the license is for only 1 user and having re-installed the OS, there are now, in effect, 2 users ( Me and Me 1, I think ).
So, having added on a new external HD, Time Machine has made a copy of most of the files, folders, apps etc onto the external HD. The internal HD is still nearly full ( 220 GBs out of 232 GBs ).
I am guessing the way to go now in order to free up space on the internal HD is to delete/trash older photos from my iPhoto library and hope that if needed, I will be able to access them on the external HD.
Am I correct ? Please advise before I do something I will regret.
Thanks, Sean.

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