Problem with exporting movie from FC4.5 to Quicktime

I recently just finished a film, after completing the final renders and exporting the project to quicktime, it dropped certain parts of audio. Thinking this might have been a stupid error on my part, I opened FC4.5 and played the project. Everything played fine, none of the audio cut out? Something seems to be happening to the project during the exportation process? Has this happened to anybody and can anybody suggest a way to fix this problem.
I have tried removing the audio tracks that disappeared and placing them again, nothing. I recompressed and still nothing, please I'm out of ideas.
Thanks.

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Problem with exporting movie from FC4.5 to Quicktime

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