Problem with pixel aspect ratio

I searched but found no answer.
I have several Maya renders which are at a resolution of 720x486 and a pixel aspect ratio of 1.2. I composited my image sequences in after effects interpreting that 1.2 pixel aspect ratio. I then exported a quicktime movie using no compression at 24fps at a resolution of 720x480 NTSC 16:9.
When I import this video into Encore 2.0 It comes out as full screen. Not only is it full screen, but when I preview the dvd, the video is blurry with scan lines and black bars on the left and right side. The menu however, is widescreen (I used a template as a test)and perfectly clear. I tried to select the asset and go to file>interpret footage, but this option is grayed out. I have also tried exporting an avi from after effects and importing that into Encore. It still will not let me set the pixel aspect ratio. I have read that After Effects does not embed the pixel aspect into exported videos. I have also read that I should export mpeg2 videos for use in Encore, however I do not see this option in After effects or Premiere Pro.
What am I doing wrong? Any help is appreciated. If I left any information out that could be useful, please let me know.

(Ack, for some reason I typed "DVI" and really meant "DV")
Thanks for the response. I don't really care if I preserve the 4:3 aspect ratio. Or does my GL1 not use square pixels and I just never noticed it? It's strange I've never seen this problem until FCE HD.
I have tried exporting a number of ways from FCE, including Export > QuickTime Movie... and Using QuickTime Conversion... For the latter, I typically set it to export as 720x480. I always export as video. The final export contains video clips as well as still images within the video.
I am a bit embarrassed having to ask this question. I've been working with still images in photoshop for over a decade and worked a lot with video during that time as well.
Thanks again.

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Message was edited by: pfcurtis

I just noticed that I listed this topic under iDVD'08. I should have listed it under the latest iLife'09. Can the Moderators move it please?

Problem with AIC aspect ratio in iDVD

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Message was edited by: Haberdasher

Sorry to bump, but any ideas?

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