Problems booting from external drives

Ever since I got this 6-core 2013 MacPro (January 2015), I have had strange problems and glitches, but for this posting, I am talking about problems being able to boot up from external drives. I took the 4 external drives out of my old 2009 MacPro and put them into a 4-bay Thunderbolt enclosure. This enclosure can be configured as a RAID if all drives are the same (which they are not) or it can just be a place to be able to access all 4 drives. I used to be able to boot from each of those drives on the older MacPro but I am unable to do so now. They show up in the System Preferences/Startup Disk but if I choose one, it just reboots into the new MacPro drive. I even tried pulling out a couple of the drives and mounting each into a USB 3.0 (Sabrent) dock and still I could not boot from those drives which have the latest version of Yosemite. Yes, they are formatted correctly. I used to boot from them. I was able to clone one of the drives to a Seagate USB 3.0 hard drive and boot from that. Although, the clone was not perfect. It didn't transfer all my settings so I could recover some logins and serial numbers I wanted that I have never been able to retrieve since I got this new Mac.
Yesterday, I formatted a 32GB flash drive and tried to install Yosemite on it. I planned to put DiskWarrior on it. When I started to install Yosemite (from a saved download) it let me choose that drive, but when it restarted before installing, I was right back where I started on my MacPro's hard drive.
Is this normal behavior for the 2013 MacPro? Or is it just mine? I am beginning to think I may have a lemon since I have had other strange problems that don't go away.

Not all external devices are bootable. First stop would be involve whoever handles the 4-bay Thunderbolt. Seeing how it has a bridge most likely in order to support RAID mode that may not have the correct frmware or other reasons.
https://bombich.com/kb/ccc4
https://bombich.com/kb/ccc4/search/bootable%20volume
CCC is the only program I would be using.

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