Problems Importing Complete Video in DVD Studio Pro

I have video that I edited in Final Cut Pro and exported as a QuickTime file (.mov), with chapter markers. I checked the video in QuickTime player and all my chapter markers were present, and the entire video played through the end. The whole movie is 52 minutes in length. However, two problems have arisen once the video was imported into DVD Studio Pro.
1. All my chapter markers disappeared.
2. The entire audio track is present and will play through the end of the movie, but the video cuts off more than 6 minutes before the end of the movie.
I have tried several options to get this video to import correctly. Sometimes the chapter markers remain, but I can never get the video track to import completely. I would greatly appreciate any advice, as this has become very frustrating. Thank you.

Since my last post, I have tried importing a couple different versions of the video file. One attempt included chopping the video file into 2 parts and exporting them two separate .mov files from FCP. I then tried to insert them into the track editor as separate entities that played back-to-back. This led me to the discovery that DVDSP will not let me have a video track that plays any longer than 00:45:58:21. Why this is, I do not know, but I am convinced this problem lies within DVDSP, not in the video file. Is there a setting somewhere that limits the length of a video?

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