Problems importing iPhoto library into Aperture 3

When I got my mac, I imported a collection of images on an external drive into iPhoto, and worked with them there. I also imported images from memory cards directly into iPhoto.
During the original import, I selected the "leave files in place" option. For the direct imports from memory cards, I just imported them. I didn't realize that it would bundle everything into a single file when I did that, and I wasn't expecting what I ran into next...
I finally purchased a copy of Aperture 3 for its more powerful tools and smoother workflow. After installing it, I imported my iPhoto library into it, with the leave in place option... and found that Aperture couldn't load most of the images. It shows placeholder frames instead.
I have tried reconnecting the masters, to no avail; their paths are correct, so they're not changing, and Aperture insists that the masters are missing before and after.
I tried repairing the database with the database first aid tool, and it had no effect.
I tried rebuilding the database, and the result was disastrous; after that I had *no* images in Aperture. None. Even the few that I'd imported directly from media into Aperture were gone.
So I restored my Aperture database from my TimeMachine backup which impressed me with how easy it was, and now I'm back where I started... most of the images imported from iPhoto are inaccessible in Aperture, so I can't use Aperture for most of my image editing, even though iPhoto reads them without any trouble.
Any suggestions?

Frank:
Yes, all of the images are available in iPhoto, whether they're in the iPhoto library, or on the external drive.
Aperture isn't showing any symbol other than the dotted line frame, at least none that I've seen yet. I thought at first that it was the images on the external drive that were missing, but it's actually showing some of them, and not showing others even in some cases ones in the same folder. If a screenshot would help, I'll capture one (I don't know how to do that in OSX yet, though I suspect it's just a matter of the right key combo?).
CalxOddity: It's an OSX volume, but I'm not sure how to determine which filesystem it's using, or else I'd be more specific.
leonieDF: It is a network volume, one of the Time Capsule drives. Though I knew it would slow down loading, I didn't expect any other problems, since iPhoto doesn't have any.
Thanks!

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