Problems since upgrading to Leopard

I have a Powermac G5 2.0 dual, 12 gig ram, 10.5.4. Since I upgraded to 10.5.4 and installed an eSATA for the time machine backup, I've had the oddest problems. It takes between 5 and 10 minutes for the computer to start up and get past the blue screen to the log in screen. Then time machine is no where to be found, despite the "my book" 1 terabyte eSATA drive appearing to be on. I then turn on the drive and it seems to speed things up a bit.
I ran the disk utility, which took forever to operate. No errors or problems were found.
I'm a bit lost. Leopard has been a frustrating upgrade so far and I'm looking for some possible solutions. Should I just take the eSata out for the moment and see what happens without it?
Suggestions?
Thanks

I disconnected the eSATA and the system started in normal time. I've since reconnected the eSATA and it is back to being very slow to recognize the MyBook 1terabyte drive. Any suggestions on what could be causing the eSATA to be so slow in being recognized? The initial backup to Time Machine was super fast once it got started and the set up seems to be speedy once the drive is recognized. It is just taking between 5 and 10 minutes to recognize the eSATA.
Suggestions?
Thanks

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    +[Apr 16 10:22:05] DEBUG (SchemaUpgrader.java:82) - Script Update v4d_to_v4f Oracle.sql does not match the filter+
    +[Apr 16 10:22:05] DEBUG (SchemaUpgrader.java:82) - Script Update v4d_to_v4f SqlSrv.sql does not match the filter+
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