Problems updating from OSX 10.6.7 to 10.6.8

I've installed the new FCPX update on my iMac system, my second system, and it appears to be working fine. As part of the process I had to update the OS to 10.6.8 from 10.6.7.
So I felt that was successful and have tried to do the same on my mac tower primary system. This is the system that was built for me by a local systems integrator but has never worked as smoothly as it should and still crashes several times a day. I finally gave up hoping the systems integrator would ever make good on the setup after a couple of years, which is a long story and I won't bore you with it here.
On trying the update on the tower system, though, I get a "panic" on rebooting after the update of the OS. This is before even attempting to install the FCPX update. I get the restart message and the system always goes to the "panic" screen and hangs there, requiring a reboot which results in another hang.
I had made CCC clones of the system drive before doing the update, so I can boot to one of those, then CCC clone the system drive back to itself, and everything works normally. If I try to update the OS I get the "panic" screen again and the cycle repeats.
I'm pasting the error report below. I'm well out of my depth in trying to make sense of the report. I'd appreciate any help I can get on what the problem is and how to fix it.
Thanks in advance.
John
KERNAL PANIC
Interval Since Last Panic Report:  2097830 sec
Wed Sep 21 09:03:54 2011
panic(cpu 0 caller 0x560821): "getPhysicalSegment() out of 32b range 0x3f20000000, len 0x0, class IOGeneralMemoryDescriptor"@/SourceCache/xnu/xnu-1504.15.3/iokit/Kernel/IOMemory Descriptor.cpp:1594
Backtrace (CPU 0), Frame : Return Address (4 potential args on stack)
0x84c3bcc8 : 0x21b837 (0x5dd7fc 0x84c3bcfc 0x223ce1 0x0)
0x84c3bd18 : 0x560821 (0x5e6dfc 0x20000000 0x3f 0x0)
0x84c3bd68 : 0x55d2df (0xb51c280 0x0 0x0 0xbf13200)
0x84c3bd88 : 0x55ceee (0xbf13200 0x0 0x0 0x10000)
0x84c3bda8 : 0x850efdd7 (0xbf13200 0x0 0x0 0xffffffff)
0x84c3be18 : 0x543f60 (0x857cc000 0xb302a80 0x1 0x506b76)
0x84c3be78 : 0x542137 (0xb302a80 0x857cc000 0x84c3bf0c 0x51a1b0)
0x84c3bf28 : 0x5426e9 (0xb302a80 0xbfbb580 0x0 0x516766)
0x84c3bf78 : 0x5443d5 (0xb302a80 0x8 0x84c3bfac 0x1)
0x84c3bfc8 : 0x2a179c (0xbf124e0 0x0 0x2a17ab 0xc0cbb7c)
      Kernel Extensions in backtrace (with dependencies):
         com.aja.iokit.kona3(6.5.0)@0x850c3000->0x85107fff
            dependency: com.apple.iokit.IOSerialFamily(10.0.3)@0x7987b000
            dependency: com.apple.iokit.IOPCIFamily(2.6.5)@0x797d2000
            dependency: com.apple.iokit.IOAudioFamily(1.8.3fc2)@0x84ff7000
            dependency: com.apple.iokit.IOGraphicsFamily(2.2)@0x85724000
BSD process name corresponding to current thread: kernel_task
Mac OS version:
10K549
Kernel version:
Darwin Kernel Version 10.8.0: Tue Jun  7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386
System model name: MacPro3,1 (Mac-F42C88C8)
System uptime in nanoseconds: 21757285854
unloaded kexts:
(none)
loaded kexts:
com.sony.pci.SxS64          1.0
com.sony.pci.SxS          1.0
com.microsoft.driver.MicrosoftMouseUSB          6.2.2
com.microsoft.driver.MicrosoftMouse          6.2.2
com.aja.iokit.kona3          6.5.0
com.roxio.BluRaySupport          1.1.6
com.ATTO.driver.ATTOExpressSASRAID          3.3.0
com.apple.driver.AppleIntelPenrynProfile          17 - last loaded 21248009039
com.apple.Dont_Steal_Mac_OS_X          7.0.0
com.apple.driver.AppleIntelNehalemProfile          11
com.apple.driver.AudioIPCDriver          1.1.6
com.apple.driver.AirPortBrcm43xx          423.91.27
com.apple.GeForce          6.3.6
com.apple.driver.AppleIntel8254XEthernet          2.1.3b1
com.apple.driver.AppleUSBDisplays          289
com.apple.driver.AppleIntelMeromProfile          19
com.apple.driver.AppleMCEDriver          1.1.9
com.apple.driver.AirPortBrcm43224          428.42.4
com.apple.driver.ACPI_SMC_PlatformPlugin          4.7.0a1
com.apple.driver.AppleLPC          1.5.1
com.apple.driver.CSRHIDTransitionDriver          2.4.5f3
com.apple.iokit.SCSITaskUserClient          2.6.8
com.apple.BootCache          31.1
com.apple.AppleFSCompression.AppleFSCompressionTypeZlib          1.0.0d1
com.apple.iokit.IOAHCIBlockStorage          1.6.4
com.apple.driver.AppleFWOHCI          4.7.3
com.apple.driver.AppleUSBHub          4.2.4
com.apple.driver.AppleAHCIPort          2.1.7
com.apple.driver.AppleIntelPIIXATA          2.5.1
com.apple.driver.AppleUSBEHCI          4.2.4
com.apple.driver.AppleEFINVRAM          1.4.0
com.apple.driver.AppleUSBUHCI          4.2.0
com.apple.driver.AppleACPIButtons          1.3.6
com.apple.driver.AppleRTC          1.3.1
com.apple.driver.AppleHPET          1.5
com.apple.driver.AppleSMBIOS          1.7
com.apple.driver.AppleACPIEC          1.3.6
com.apple.driver.AppleAPIC          1.4
com.apple.driver.AppleIntelCPUPowerManagementClient          142.6.0
com.apple.security.sandbox          1
com.apple.security.quarantine          0
com.apple.nke.applicationfirewall          2.1.12
com.apple.driver.AppleIntelCPUPowerManagement          142.6.0
com.apple.iokit.IOFireWireIP          2.0.3
com.apple.iokit.AppleProfileFamily          41
com.apple.driver.AppleHDAController          2.0.5f14
com.apple.iokit.IOHDAFamily          2.0.5f14
com.apple.iokit.IOAudioFamily          1.8.3fc2
com.apple.kext.OSvKernDSPLib          1.3
com.apple.iokit.IOSerialFamily          10.0.3
com.apple.iokit.IO80211Family          320.1
com.apple.iokit.IONetworkingFamily          1.10
com.apple.driver.AppleSMC          3.1.0d5
com.apple.driver.IOPlatformPluginFamily          4.7.0a1
com.apple.driver.AppleSMBusPCI          1.0.10d0
com.apple.nvidia.nv50hal          6.3.6
com.apple.NVDAResman          6.3.6
com.apple.iokit.IONDRVSupport          2.2
com.apple.iokit.IOGraphicsFamily          2.2
com.apple.driver.CSRUSBBluetoothHCIController          2.4.5f3
com.apple.driver.AppleUSBBluetoothHCIController          2.4.5f3
com.apple.iokit.IOBluetoothFamily          2.4.5f3
com.apple.driver.AppleUSBHIDKeyboard          141.5
com.apple.iokit.IOUSBHIDDriver          4.2.0
com.apple.driver.AppleHIDKeyboard          141.5
com.apple.driver.AppleUSBMergeNub          4.2.4
com.apple.driver.AppleUSBComposite          3.9.0
com.apple.iokit.IOSCSIMultimediaCommandsDevice          2.6.8
com.apple.iokit.IOBDStorageFamily          1.6
com.apple.iokit.IODVDStorageFamily          1.6
com.apple.iokit.IOCDStorageFamily          1.6.1
com.apple.driver.XsanFilter          402.1
com.apple.iokit.IOATAPIProtocolTransport          2.5.1
com.apple.driver.AppleFileSystemDriver          2.0
com.apple.iokit.IOFireWireFamily          4.2.6
com.apple.iokit.IOUSBUserClient          4.2.4
com.apple.iokit.IOAHCIFamily          2.0.6
com.apple.iokit.IOATAFamily          2.5.1
com.apple.iokit.IOSCSIParallelFamily          2.1.1
com.apple.iokit.IOSCSIArchitectureModelFamily          2.6.8
com.apple.iokit.IOUSBFamily          4.2.4
com.apple.driver.AppleEFIRuntime          1.4.0
com.apple.iokit.IOHIDFamily          1.6.6
com.apple.iokit.IOSMBusFamily          1.1
com.apple.security.TMSafetyNet          6
com.apple.kext.AppleMatch          1.0.0d1
com.apple.driver.DiskImages          289
com.apple.iokit.IOStorageFamily          1.6.3
com.apple.driver.AppleACPIPlatform          1.3.6
com.apple.iokit.IOPCIFamily          2.6.5
com.apple.iokit.IOACPIFamily          1.3.0
Model: MacPro3,1, BootROM MP31.006C.B05, 8 processors, Quad-Core Intel Xeon, 3 GHz, 6 GB, SMC 1.25f4
Graphics: NVIDIA GeForce 8800 GT, NVIDIA GeForce 8800 GT, PCIe, 512 MB
Memory Module: global_name
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x88), Broadcom BCM43xx 1.0 (5.10.131.36.9)
Bluetooth: Version 2.4.0f1, 2 service, 19 devices, 1 incoming serial ports
Network Service: Ethernet 1, Ethernet, en0
PCI Card: pci-bridge, sppci_pci2pcibridge, Slot-3
PCI Card: pcif1d0,c0ff, sppci_video, Slot-3@8,12,0
PCI Card: pci-bridge, sppci_pci2pcibridge, Slot-3
PCI Card: NVIDIA GeForce 8800 GT, Display, Slot-1
PCI Card: ATTO ExpressSAS R380, sppci_raid, Slot-2
Serial ATA Device: ST3320820AS_P, 298.09 GB
Serial ATA Device: ST3500630NS, 465.76 GB
Parallel ATA Device: OPTIARC DVD RW AD-7170A
Parallel ATA Device: OPTIARC DVD RW AD-7170A
USB Device: Hub, 0x05ac  (Apple Inc.), 0x912f, 0xfd500000
USB Device: Keyboard Hub, 0x05ac  (Apple Inc.), 0x1006, 0xfd510000
USB Device: Microsoft Wireless Optical Mouse® 1.00, 0x045e  (Microsoft Corporation), 0x00e1, 0xfd511000
USB Device: Apple Keyboard, 0x05ac  (Apple Inc.), 0x0220, 0xfd512000
USB Device: Apple Cinema HD Display, 0x05ac  (Apple Inc.), 0x9221, 0xfd520000
USB Device: USB 2.0 Hub [MTT], 0x1a40  (TERMINUS TECHNOLOGY INC.), 0x0201, 0xfd200000
USB Device: USB 2.0 Hub, 0x1a40  (TERMINUS TECHNOLOGY INC.), 0x0101, 0xfd270000
USB Device: Bluetooth USB Host Controller, 0x05ac  (Apple Inc.), 0x8206, 0x5d200000
FireWire Device: unknown_device, Unknown
FireWire Device: built-in_hub, Up to 800 Mb/sec
FireWire Device: unknown_device, Unknown

Thanks for the reply. The systems intregrator did a number of complete reinstalls when they were trying to work out the issues. I'm actually hoping this is a hardware issue that may finally be determined through this upgrade problem, if that makes sense. If that doesn't pan out I may just get a new, larger hard drive and do as you suggest, since they're so cheap. But I hope this will somehow track down the larger problem of system crashes.
Best,
John

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