Problems with a/v skipping and USB lock up

I'm having no end of trouble with the latest kernels. I'm not sure when the problems started so I am going to try downgrading until they go away, or build the kernel myself (might be a new feature being enabled that doesn't like my system).
After starting Azureus, playing video will cause the audio and video to stall for about 1 second and then it rushes to catch up. In fact, it seems like everything stalls (mouse cursor is also affected). This happens every minute or so. The problem persists even after closing Azureus, until I reboot.
df takes about 20 seconds to run. It seems to wait a few seconds for each hard drive. I think this issue appeared with 2.6.22.
I tried to copy a large amount of files (about 60GB) to a USB hard drive last night. It stopped at about 20%. I tried to kill the process but it would not budge. I could not even reboot - I had to sync, pull the plug, and hope for the best.

Used a little different setup today. You can see it here . (Fig.3)
I did some experimenting using Trillian and AIM on the PC with the following results:
iChat-Trillian
Mac-> Pc Video Chat yes
Pc->Mac Video Chat no
Mac->Pc Tlf. Yes
Pc->Mac Tlf. No
Mac-> Pc File transf. Yes
Pc->Mac File tranesf. Yes
Mac->Pc Direct connect yes
Pc->Mac Direct connect kind of...the picture never shows, just the path on the client it was sent from, like c:/desktop/mysecrets/microcraft.jpg
iChat-AIM
Mac-> Pc Video Chat An unknown error occurred
Pc->Mac Video Chat Yes {AOL} is shown
Mac->Pc Tlf. n/a
Pc->Mac Tlf. n/a
Mac-> Pc File transf. yes
Pc->Mac File transf. yes
Mac->Pc Direct connect yes
Pc->Mac Direct connect yes
Trillian is behaving in a similar way from my experiences with other macs. I'll have to try that too of course. What's strange here is how different the PC clients are working. I've also tried switching the IP's on the machines with the exact same results. Is the software the actual problem? I'll just have to get that other mac to find out...arghh, too tired right now Zzzzzzzzz.....
If the service to me is NATed? Yes
and the rest... Well the ISP is convinced that it is the Cisco routers, but having their mail server hacked they are (still) busy figuring that out...

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