Problems with audio when exporting to movies

Hi All,
I teach sequencing and one of the projects is to score a short piece of music to film. Logic Pro 9 is great for this (though beat mapping isn't the most friendly of functions) and my students (most only 16-18 years old) have made some great projects.
Right the question is what are the best settings to use when exporting the audio to movie? Some students don't get any sound when bounced or some are getting the oprginal with the new audio (doubled).
To assess and store student work we use vimeo for video projects and the wierdest thing is that when uploaded these bounces (the ones that worked) have no sound at all.
Never had these issues with Logic 8 and just wondering if anyone has any ideas on how I can resolve this?
Thanks and happy new year.

I've used flip4mac for about a year and have had no problems with it. I mostly use it to export preview versions for windoze people. The quality is very good, though it takes significantly longer to export than a similar-quality quicktime movie.

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Problems with audio when exporting to movies

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