Problems with Hyperlinks when exporting to EPUB

I've been trying to export a CS5 indd to Epub (using corEpub script -http://www.teusdejong.nl/indesign/-), but there seems to be some kind of conflict with Hyperlinks (there's 6000 of them): when they are near to a footnote reference, the text of hyperlinks (and some text surrounding it, don't know the criteria) just disappear and the reference doesn't work. Any ideas about what could be happening?
(Sorry for my english)

I just came across this same problem -- similar but not exactly the same.
Text in a table does not print properly when text is superscripted.
This is a problem since we have a French invoice that has a fair bit of superscript. I tried to work around by decreasing the font size and increasing the baseline, but this did not work.
I'm using Pages 5.1 and Mavericks.
Anyone have any ideas????

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