Problems with Sony NX3 AND Sony Z5 avi files

Very, very strange problem. I will try to give as much detail as possible so bear with me.
I currently edit with two different computers. One uses Premier 3 the other uses Premiere 6. I shoot with several different cameras, but for purposes of this discussion I will talk only about the Sony Z5 and the Sony NX3. I capture my footage on a CF card (Z5) or SD card (NX3)
All HD footage shoot with the Z5 and/or the NX 3 works fine on either system. However any SD footage that is over a certain length will not import into premiere 6 (if it's from the Z5) or the length of the footage will only be 2:37 (on footage from the NX3). However the SD footage from either camera will play perfectly on the system with Premiere 3.
Any ideas on what my problem with premiere 6 is?

I caputured footage from my ZU1 yesterday that encountered time code breaks. They should not have been there. My only thought is that the breaks occured when I shut the camera down and started recording later.
Maybe... I assumed it was user error... I was wondering if perhaps a setting in the camera was causing the breaks when the camera powers down.

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