Problems with syncing Ipad with ITunes: apps won't appear on Ipad and organizing icons won't save

I have a new Ipad 4 for three weeks. Yesterday I start having some problems with syncing my Ipad with ITunes (earlier all was without troubles):
- downloaded in ITunes on PC apps won't transfer to my Ipad - I press Apply and sync, it goes successfully, but apps won't appear on Ipad.
- I tried organizing icons on Ipad from PC, press Apply and sync, it all goes succesfully, but on Ipad icons won't rearrange. But ITunes shows that they are rearranged...
- also I tried syncing my books adding one new book, press sync all books, and new book won't appear. Only when I've chosen every book separately, they transfered.
I use USB for this.
I tried resetting my Ipad, reinstalling ITunes on PC, deauthorizing and authorizing my computer, but it didn't help.
Apple ID are the same on PC and Ipad.
I hope that I'm not the only one with this problem. And also forgive my mistakes if there are any - English is not my native language. Thank you!

I know that it is time consuming and a bit of a pain in the butt to have to do it, but I would backup the iPad, restore to factory settings and then restore from the backup, and sync everything back to the device. It's going to take a while because you have a ton of music on the iPad, but IMO, that would be your best option now.
You could try unsyncing all of the music, and then resync it all again, but that takes time as well. If you are going to spend that much time trying to fix it, you may as well restore the device ...IMO once again.
Use iTunes to restore your iOS device to factory settings

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