Project importing to NWDB but not Server CM folder

When importing projects into MII, we sometimes run into the issue where the files successfully updates to the NWDB database (XMII_FILES) and I can also view them in the workbench. Though if I attempt to execute anything in the WEB folder, I get a file not found error in my web browser. When this occurs I check the server where the files are stored under (usr/sap/...root/CM/ and none of the files imported are in this folder. Does anyone know why this happens or how I can force MII to push the files to the server?
If I create a new irpt in the workbench and save it, I can see it in both XMII_FILES and in the root/CM folder. The issue sometimes happens when we import new files.
We are using a Linux in a clustered environment. I've read that a bad cluster setup can cause issues but it appears this one is setup correctly.
Thanks,
George

Hello,
Thanks for the input. We have tried publishing it and it hasn't had any effect. Also The "blowout mode of Catalog service" also does not have any effect.
Thanks,
George

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