Project issues

I've been running into issues while using Final Cut Pro 7.
My specs & details are below.
Currently, FCP has been quitting on me while I'm editing. This particular project is being edited off of a 4TB G-RAID, with close to 1TB of free space. The project contains 256 GB of media.
For internal drives, I have the following:
1 TB (88 GB free)
3 TB (427 GB free)
640 GB (218 GB free)
One problem is that I often run out of space on the internal drives; I am constantly in the process of moving stuff off. The applications/start up drive is the 1TB. Could this be an issue though I'm working off an external?
Specs:
Mac OS X (10.6.8)
Processor: 2 x 2.66 GHz Quad-Core Intel Xeon
Memory: 12 GB 1066 MHz DDR3
Displays:   Resolution: 1920 x 1200 @ 60 Hz
Pixel Depth: 32-Bit Color (ARGB8888)
VRAM: 1024 MB
Working with Apple Pro Res 422 LT clips converted via Compressor from Canon 5d MarkII.
In my Timeline, I have some Templates from Motion. In general, this seems to cause slow playback and glitches. Would this make sense? The only reason I would think yes, is the frame rate of these templates is 29.97, while my sequences are 23.98fps.
Thanks so much for any tips or help.

Shane,
Wish I had a successful story for you, but not yet. Note, I haven't done all of your suggestions (yet anyway). After seeing your input, I talked with our IT guy and he wanted me to first, before wiping anything, try re-installing the software. So far, in order I have tried:
1. Trashing preferences
2. Re-installing Final Cut Studio
I did this (2) this past Monday, February 13. I used Mac Keeper to uninstall, then did a complete re-install. Soon after I was up and running, I noticed a (new) problem with Compressor: I couldn't Submit any batches as the Submit button appears to be greyed out. Not knowing what else to do, I searched a bit online and decided to do another re-install - this was Tuesday. Since then, the issue still remains. Compressor and Q Master are the same version, and both are within my Applications folder. I'm not sure if the same issues reside with Final Cut that I was having before. But things are still messed up, ie with Compressor. Also, the Share feature in FCP is now not working.
Any new suggestions, or would you revert me to your other issues?
Thanks a lot, I really appreciate it.
Kristin

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