Proxy files not linking in server

Couple issues going on here. I added a final cut pro project to the server yesterday and the Server began compressing all the files. After thumbnails and poster frames, I am only doing edit proxies currently because I need them sooner. I saw the compressions going in the batch monitors so I let it rul over night. The next day, after 14 hours of compressing, the files began failing, most due to Quicktime Error -50 (whatever that is). I looked on the server and noticed that a lot of the files never created thumbnails and none had Edit Proxies. I opened the Edit Proxy package and searched for the files and found the edit proxies manually, but things just are linking back to Final Cut server. Anyone see this before?

Try processing the problematic files manually in Compressor and see if they fail there too.
Check your disk space and permissions.

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