PSE 11 Organizer shows broken images on almost all jpgs

1. I spent three days reorganizing all of my 90,000+ photos, putting them in hierarchical date ordered folders on my Windows 7 PC with 16GB RAM, lots of HD space on my second HD E (recently installed from an older laptop but with 700GB, 60% available).
2. I rebuilt a new catalog using just the new folders of the 90k plus images.
3. The first time I tried to rebuild the catalog, Organizer crashed with an "unusual runtime error".
4. I broke the rebuild down into three smaller pieces adding new folders of 30k images at a time and by midnight last night I had a new catalog.
5. Bring up the new catalog this morning and most of the images show a broken image. I can edit the jpgs, save them, etc in the editor, etc.
6. I've turned off face recognition, checked for errors in the catalog (none but corrected anyway). Show all files. Reset editor preferences. None of this helps.
7. All RW2 files show up, some PSD files do and some do not. Same with JPG's - a very few appear and most show a broken image.
8. The first time I scrolled through the images, trying to see anything, Organizer would show the image briefly, then go to a broken image.
9. The "Location" link to the file (I just discovered this) in the Information tab on the right, show the correct file location and that file (which can be edited after all) is just fine. Windows shows the file.
10. If you edit a file from Organizer, the broken image is repaired. So, a workaround would be to put all 90k images into the PSE editor. I don't think I have that much time...
11. Task Manager shows 40% CPU and 40% memory usage, btw.
Ideas, please?

Also, I am now trying to install PSE 12. One of the first instructions is to click Install Adobe Photoshop Elements in the Adobe Photoshop Elements dialog box. When I insert my disc in my DVD drive I don't get a PSE dialog box at all, just the Windows Autoplay dialog box asking what I would like to do with this disc. I can't believe I'm having to ask a question about installing a program from a disc! I'm pretty sure it's just me...

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