Published Site Doesn't Look Same as Local

Hello Everyone,
New and beginning user of cs4. I created a template and a few pages from it and am having a couple of problems. Using Vista Home premium which is causing incompatibility issues daily firefox 3.5 browser and fireftp because I can't understand instructions for dw ftp.
1) Using a template from the ones offered (two column fixed, left sidebar, with header and footer), I change the background color in each div using "find code." The site displays correctly locally but once published the gray background is still on header and sidebar (Spry menu color is fine).
2) While creating pages from the template, some of the pages do not display the background image of the template, instead they display the background color of the div containers. This is usually corrected after I make a change on the template and save the changes to the pages from there.
3) most annoying of all but not as important as above, I would like to get rid of the old/deleted  files still displayed at the dw start up. how is this possible?
www.bhikkhuni.net
Thank you for your help.

I've answered my own questions. When I reopened the template, the gray color was showing so I changed it again and resaved it. Don't know why that happened. It had been saved before. Also the other question about the annoying files- I've created five or six new files today and saw they replaced the old ones. Thanks anyway.

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