QT Pro movie aspect ratio and masking

Hello,
This might be beyond the scope of Quicktime Pro. But I'm looking for a way to place a jpg/png with an alpha channel (cut out) into quicktime. Then be able to add a quicktime to be seen through the image. But the kicker is to change the aspect ratio of the movie instead of the still image.
In Pro, I can add a masked image into the movie, but can't control the ratio of the movie and image separately.
I can do this in Final Cut & Final Cut Express but would like to find a way for others to do this with a less expensive or free software.
Any ideas how to change the movie's aspect ratio in QTPro while keeping the mask's ratio the same?
Or is there another open-source software to do this?
Thanks ahead of time,
Adam

A "mask" is just a black and white image file sized to the dimensions of the video.
Adding a PNG (JPEG doesn't support alpha channels) file to the entire video would allow you to adjust both track dimensions independently via the Movie Properties window.

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