Question about External HD as Backup

I'm backing up my HD using a LaCie external and SuperDuper. SuperDuper is set to erase the external and transfer files/folders, etc. from the HD to the external and reboot the computer using the external. Everything seems to work fine but I thought whichever is the start up HD whether it be the Macintosh HD or the external HD, that HD should be above the other. So if the external HD is the start up one then it should be above the Macintosh HD/computer HD. But it is not. So, when I restart and pressing on the option key(I think that's the one), the external should be the one but it is in the same spot all of the time. So, I don't know whether the computer started up using the computer HD or the external. Am I doing this whole thing correctly? How can I make sure the HD I'm using is the one I want without going to system folder and changing the start up disc.

My previous machine was Tiger 10.4.11 and I recently got a new machine running Snow Leopard 10.6.5. I was always "obsessed" in keeping my disks in the same position on my desktop, so much so I used a app called DIM (as a login item) to ensure the disk positions,
http://www.parker9.com/desktopIconManager2.0.html#d
One of the first things I noticed on SL is that I didn't need DIM. The SL Finder apparently remembers where the disks are placed on the desktop from boot-to-boot no matter which disk it happens to boot from.
On Tiger I used to depend on which boot disk appeared first (top right) as a confirmation that I actually booted from that disk. Of course I had to look fast before DIM (as a login item) switched the disk positions But if I didn't happen to notice which disk appeared first I could always do what I now do on SL and use Terminal (I always keep a terminal session "laying around") with the command,
ls -l /Volumes
Whichever volume is symlinked to "/" is obviously the boot volume.
...Of course "About this Mac" is a good suggestion too

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