Question about migrating data from mac pro to new macbook

Hello all,
I ordered a new macbook today and i'm very excited. It will be the first time i've had two apple machines simultaneously. My question is in regards to getting my new macbook all stocked up with the files and apps currently residing on my mac pro.
1. I don't know if by using migration assistant if the data is removed from the old machine and added to the new. I don't want that. I want everything currently on my mac pro to remain, unchanged.
2. I'd normally use target disk mode, but no firewire on the macbook, so, no dice there.
3. My startup disk and apps and such reside on one HDD in my mac pro, while my home folder, or user files, or whatever, reside on a separate HDD. will this cause a problem.
Your input is much appreciated.

It can be done with USB, but it is slower and less reliable.
Ethernet works great, IF you have two FUNCTIONAL machines. The great thing about Firewire Target Disk mode was that if the HD/OS was corrupted, or the computer was for some reason unbootable you could still get data off of it quickly, without tools or special equipment. Firewire Target disk mode has saved my rear several times on every machine I have owned.
The hard drive is fairly easy to remove on the aluminum Macbook. I would remove it and install it in an external Firewire enclosure temporarily to transfer your files quickly and reliably, then put the drive back in the Macbook.
Firewire allows two operating modes. One is asynchronous, like USB which suffers from latency, bus contention and collisions.
The other is isochronous mode, and it lets a device carve out a certain dedicated amount of bandwidth that other devices can't touch. It gets a certain number of time slices each second all its own. The advantages for audio/video should be obvious: that stream of data can just keep on flowing, and as long as there isn't more bandwidth demand than the wire can handle, nothing will interfere with it. No collisions, no glitches.

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