Question regarding stacks, searches and smart collections

Apologies if this is considered a 'basic' question - but I hope that someone can help me.
I'm currently in the process of upgrading/migrating a reasonably large Photoshop Elements 6 catalog where I've made extensive use of hierarchical folder structures, keywords and star ratings to quickly locate photos using a range a different techniques.I've successfully upgrade/migrated the Photoshope Elements catalog into Lightroom 3 and as part of the verification that everything has come across OK - I've done some comparisons of catalog searches in Elements and Lightroom and seem to be getting some strange results which I'm not sure if this is simply how things work or if I'm doing something wrong. I think part of the issue is caused by the fact that Elements always does destructive edits - so I never edited original photos in Elements so made extensive use of copied photos and stacks - but this didn't seem to cause any issues as Elements seem to keep things straight.
In Elements, the result of a query or Smart Collection might return 18 stacks of photos (with most of the stacks containing multiple photos) - but for most purposes Elements simply treated this as 18 seperate photos and simply ignored all of the photos under the top of the stacks. 
Now in Lightroom I get different results depending on how the photos are identified. If I use either a keyword or rating search using the 'Right Hand' panel - I get a photo count returned which is always much higher than 18 but Lightroom seems to retain the stacks so only displays 18 different stacks,  However, if I put the same search criteria into a Lightroom Smart Collection - it retrives and displays ALL of the photos in the 18 stacks (so it displays 2-3 times more photos) and I can't seem to find a way to get the Smart Collection to honour these stacks. I know that I could probably alter each of my photo stacks and change the rating or keyword of all of the photos under the top of the stack - but trust me this is a huge amount of work!!
Is this simply the way Lightroom works?  I can partially understand and accept the way direct keyword or rating searches work using the 'Right Hand' panel - although the photo counts are different from what I've got used to in Elements the way the photos are actually displayed is not that different. However, what really confuses me is the completely different way Smart Collections work when compared to the 'equivalent' direct query.  Have I missed something?  Or is this some form of technical issue/bug/future enhancement request?
Also, on a slightly related issue - I've noticed that keywords with spaces (or other special characters) seem to cause issues for Lightroom - while Elements seems to cope with these OK. From the reading I've done it looks like one of the most common suggestions is to simply remove the spaces (..etc.) in the keywords - is that what most people would recommend??
Any help, advice or other suggestions would be appreciated.
Kind Regards .... Jerry

I'm currently in the process of upgrading/migrating a reasonably large Photoshop Elements 6 catalog where I've made extensive use of hierarchical folder structures, keywords and star ratings to quickly locate photos using a range a different techniques
Please tell us EXACTLY the steps you are using to move your PSE catalog to Lightroom.
However, if I put the same search criteria into a Lightroom Smart Collection - it retrives and displays ALL of the photos in the 18 stacks (so it displays 2-3 times more photos) and I can't seem to find a way to get the Smart Collection to honour these stacks. I know that I could probably alter each of my photo stacks and change the rating or keyword of all of the photos under the top of the stack - but trust me this is a huge amount of work!!
I believe this is how Lightroom was designed to work. Smart collections don't recognize that some photos are at the bottom of the stack.
Also, on a slightly related issue - I've noticed that keywords with spaces (or other special characters) seem to cause issues for Lightroom - while Elements seems to cope with these OK. From the reading I've done it looks like one of the most common suggestions is to simply remove the spaces (..etc.) in the keywords - is that what most people would recommend??
I have no trouble whatsoever using keywords that have spaces in them. I have keywords that are "New York", "New Jersey", "Union Pacific Railroad", etc. Special characters, such as a comma, will probably cause trouble. Exactly what are you doing where spaces in keywords are not working properly?

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