Quicktime 10 player stutters and skips but quicktime pro doesn't

I have a early 2011 17inch i7 mac book pro and just recently when I play 60fps footage from my 7D camera in quicktime 10, the clips stutter and skips, it does this intermittently and in different parts of the same clip. I can play the clip and it would stutter at one point and then when i play it back again it would play fine at that same part and then stutter at another part. But when i open the same footage in quicktime 7 (quicktime pro) it play with no issues every single time.
So I then tried the same footage on my 8 core MacPro, and played the clips in quicktime 10, all the footage plays with no problems everytime.
Is this a hard drive issue, a grafics card issue? I was at the apple store and seen a genuis and we tried to troubleshoot it but cold not figure out the issue. The apple rep said to replace the hardrive, but i want to make sure before I do. Does anyone have any suggestions.

Thanks for the response.
I didn't realize those settings weren't controlling the same function, but I see that now... Fact is, I don't use QT all that much, and don't need much functionality from it, just to watch a few screen capture videos I create using Snapz Pro X.
Problem is, I can't control rewind/fast-forward if I can't see the controls, and QT doesn't default to showing the full display. Unfortunately, it seems the pref setting functionality I want apparently doesn't work for MY needs, so I'm stuck with having to manually select the 'fit to screen' setting EVERY TIME I open a new .mov video in QT. I see there's a keyboard short-cut to "fit to screen" (Apple Key/3), but the only thing better than needing to use a key combo EVERY time I open a movie is not needing to use one at all! Very Un-Maclike...
Wondering why QT Pro can't default to opening to the USER'S preference (whether fit to screen or full screen), so as not to have to change it EVERY TIME? This is a PRO app? How long has QT been released, a decade or two? Shouldn't it a mature app, at this point, with little nit-noids like this worked out?

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