QuickTime has short flashes of clips not in proper sequence

I'm using QuickTime Pro 7.2 on a MacPro Mac 2 x 2.66 GHz Dual-Core Intel Seopn, with 4 GB of Memory.
I am edting (in Final Cut Studio) a short video that was produced by others -- they sent me 5 QuickTime clips as my source material. I had to add a few more segments, then finish it off with type, etc.
When I export the file to QuickTime, the result is that I have several places where brief clips appear, maybe a frame or two -- from elsewhere in the video. They are NOT on the timeline of FC Studio, but have made their way into the QuickTime movie.
What is happening here, and how do I solve it?

David:
I removed all the QuickTime files that were sent to me, and when I exported the revised equence in Final Cut Studio out at a new QuickTime movie, it helped somewhat, but didn't solve the problem. The original problem (described above) was minimized, but there were still 2 places in the new file that had glitches (misplaced files) of a few frames. Here's what really baffles me: when I played the QuickTime movie a second time, it got worse, then on third play, it got even worse. More and more places were pixellated, and more misplaced files showed up.

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