Quicktime movies corrupting randomly.  "The movie could not be opened."

Hello,
Has anyone else encountered the Quicktime error where you have a perfectly functional file stored to a disk and then randomly, the file's icon will change from a still image from the movie to just the generic Quicktime file movie clip icon and then if you try and open the file you get the following error message:
The movie could not be opened.
The file is not a movie file.
Nothing was done to the file. Nothing was done to the disk. This can happen when no one is even using the computer. Once it happens, the file will not open or play at all. It just returns this error message. I've only seen this so far happen on ProRes HQ files. Doesn't matter if they are HD or SD. It is infuriating and is costing my facility a ton of money and time and making us seriously reconsider using Quicktime.
The only resource I've been able to find online that seems to be able to deal with this is:
http://aeroquartet.com/movierepair/repair.html
However, because of the nature of the content that I work with I cannot send a clip out of house for repair and cannot pay $89 per file (starting price). I would really like to see a response from someone at Apple as to why this is happening and what fixes are in the works to prevent it.
Thanks.

To Apple Discussions!
What type of files are they - .avi, .mp4, .mov, etc.?
Make sure you have the following installed:
Flip4Mac
VLC Media Player
Perian

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