Raw and CR2 files won't sort by time

I recently shot a wedding with my Nikon while my second shooter shot with her Canon. We made sure the times were the same so that Lightroom could work its organization magic. After I uploaded them, the CR2 files showed up above the Raw files. All of the images are in one folder and I have it set to Sort by Capture Time, but they will not mix together according to their times.
When I uploaded my Nikon images I realized that my year was off. It was set to 2010 instead of 2011, so I changed the metadata accordingly and it changed to the correct year for all of my Nikon images. I uploaded the Canon images after that incident, but they still won't sort by time. Do you think that metadata change has something to do with the images not mixing together or it is the file names?
There are about 1400 images all together it will be quite an exhausting experience to have to organize them myself. So I would definitely appreciate some help!
Thanks!!
Ruth

Check the timezone of each filetype.
The US is several hours behind GMT so if the corrected NEFs are GMT-relative while the CR2s are US-time-zone-relative that could explain the issue, or maybe one camera had timezones set on it and one didn’t and the difference has nothing to do with the metadata correction you did.
Did your metadata correction update the headers of the RAW files, themselves, or just LR’s internal information in its database and/or XMP files?
If the RAW files were modified, check the timestamps with EXIFtool:
http://www.sno.phy.queensu.ca/~phil/exiftool/
If only the LR-stored metadata was modified, not the RAW files, themselves, then create an XMP file for one CR2 and one NEF taken about the same time, using Metadata->Write Metadata to File(s), and examine the two XMP files in a text editor to see what the timestamps and timezones say.

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