Re-arranging apps in iPad / iTunes syncing

I was arranging my apps in my iPad into the folders that mirror my iPhone (because of the issue with restoring iPad from iPhone backup and folder arrangment doesn't sync).
I tried re-arranging the apps in iTunes, but everytime I sync'ed, the apps on the iPad would revert back to the original restore. 
What I did was:
1) delete the iPad backup from iTunes.
2) eject iPad from iTunes
3) re-arrange apps on iPad
4) re-connect to iTunes using cable.
5) back up and sync to iTunes
Hope this helps someone else.

I get that ipad specific apps wouldn't transfer, but I'm talking games like angry birds and words with friends, stuff that I would have to repurchase to get on my iphone at this point even though they're in my itunes. 
I went to the app store on my iphone and looked where you said but they weren't there either. 
Can I really not put games I've purchsed on more than one device with the same itunes acct??  that seems odd...

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    Message was edited by: dhaun

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