Record only part of my desktop

I use Quicktime Pro to record my screen and then create a Quicktime Movie. It always records all of my screen, but I really only want to record a portion of my desktop (say a specific app window). Can I do this?

Not with QuickTime X. Capture is all of the screnn or nothing.
Plenty of third party software that can do the job. I use Snapz Pro X:
http://www.ambrosiasw.com/utilities/snapzprox/

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