Recording to a different drive

Hello,
I've been recording for over a year on my default hard drive - the one Logic is installed on. I just installed an additional new hard drive. Since Logic records projects to the Logic folder, I created one on my new hard drive and also created an Alias of it to put in the default drive. The new projects are recorded to the new drive as planned. Now I'm finding a latency issue while tracking. To remedy it for now I'm turning on Low Latency mode. This works but I would rather not use it (maybe I'm wrong. Maybe this is fine).
I still have an empty Logic folder on the default drive and when I Save As to it I get no latency issue. It only happens when recording to a different drive than Logic is installed on.
I would please love some advise so I don't twist my system into a knot. I have some clients coming in next week and I would like to be on solid ground again - but also use my new drive.
I'm hoping NOT to hear that the only solution is to install Logic on the new drive.
Matt

So, your additional HD is in your Mac Pro, yes?
What sort of drive is it (spin speed etc). It's not a 'green' drive is it? You don't need to alias a project folder back to your boot drive. I have 4 7400 speed (not 'Green') in my Mac Pro and have no issue.
Drive 1: System and Apps (inc Logic, obviously)
Drive 2: Logic Projects
Drive 3: Samples for EXS etc
Drive 4: Backup
You wouldn't want to install Logic on your new drive because you'd have to put a whole system on that drive and boot from it which would defet the object of having a second drive.

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