Red frames when exported to encore

Not sure if this is an encore or a premiere pro problem
I am trying to create a blu ray disc from a video shot in HDV.
I have captured and edited my video in premiere pro and it looks great but I am having problems getting it on to a blu ray disc. I am using premiere pro CS3.
If I export to encore or use the adobe media encoder I end up with a few clips being affected by being replaced with bright red frames.
Now I have tried this on two projects and its always the same clips which are affected
so I have started a new project gone back to the source footage and captured just a clip which was affected and tried to encode that single clip with the same results it gets corrupted into red frames.
The clip plays perfectly well in premiere pro and can be exported back to tape without any problems ...so what is going on

Thanks for responding Jeff.
Its hard to know what has corrupted the frames as sometimes after encoding i get some completely red frames and some whith a little of what should be there showing through.
It happens consistantly on two clips that I have been using in different projects.
so as I said before I have created a new project gone back to the original and recaptured those two clips into my new project and tried to encode them in several different ways but all fail to encode properly.
This is a Pal Project recorded captured and edited in HDV
I used the MPEG2 settings and frame size of 1440X1080.
I first used the default setting for 1440x1080 quality high, with a default qualty of 4 and then increased the quality to 5 without improving things.
Ive tried reducing the target bit rate from the default to 20, still the same.
Ive tried using CBR instead of VBR 2 pass. still no difference.
My machine is a Dual Quadcore Xeon processors. with 4 GB of ram and a Matrox RTX2 card. both my video hard discs have around 50% free.
I really am struggling to know what is wrong.

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More information needed for someone to help... click these links and provide the requested information
-http://forums.adobe.com/message/4200840
-http://forums.adobe.com/thread/416679
-http://forums.adobe.com/thread/419406
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Read Bill Hunt on a file type as WRAPPER http://forums.adobe.com/thread/440037
What is a CODEC... a Primer http://forums.adobe.com/thread/546811
What CODEC is INSIDE that file? http://forums.adobe.com/thread/440037
Report back with the codec details of your file, use the programs below... a screen shot works well to SHOW people what you are doing
http://forums.adobe.com/thread/592070?tstart=30
For PC http://mediainfo.sourceforge.net/en or http://www.headbands.com/gspot/
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http://windows.microsoft.com/en-us/windows7/help/compatibility
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I cannot find how to select the frame that I want to appear as the Poster Frame in the exported video.
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I've been through every menu I can find & even Lynda.com training!
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A standalone image on disk (JPG etc) which is displayed by a player before the video is loaded - commonly used by video player apps on websites (YouTube etc), InDesign and PDF files, etc. so the video asset doesn't have to be opened in order for the viewer to see what they're about to watch - although the image is normally captured from the video it doesn't have to be.
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