Reduce mail file bloat in Mail 1.3.11 OS 10.3.9

How do I reduce the size of my Mail files (mailboxes or folders)? I am using Mail 1.3.11.
If I view my sent mail folder from in Mail, it show 221 messages (172MB). But if I view it from the finder at ~/Library/Mail/POP-my accont@.../Sent Messages.mbox then the file is 1.98GB.
I have tried selecting it and rebuilding, that seams to create an error where all the messages just disappear, but the file does not get any smaller. My inbox is also very much over size.
  Mac OS X (10.3.9)  

It looks like you have the problem described here:
Overstuffed mailbox is unexpectedly empty
If you’ve let that mailbox to grow too much, however, it’s too late now to solve the problem as described in the article. Mail simply cannot handle it and the only thing that rebuilding the mailbox accomplishes is making the messages inaccessible.
Because of the differences between Mail 1.x and Mail 2.x, further discussing your problem here might confuse other users with apparently similar problems running Mac OS X 10.4 (Tiger), so please start a new topic in the Mail & Address Book - Mac OS X 10.3 & earlier forum, or just look for other threads discussing the same problem there. This is actually a FAQ in that forum.

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