Reference document no and automatic clearing

Dear All,
The desired clearing variant of my client is Current invoice + FIFO
So lets say i have 3 open invoices in customers account as follows :
Due date 22 June 2010 Amount 1000
Due date 22 July 2010 Amount 2000
Due date 22 August 2010 Amount 1500
Then a payment of 2000 should clear the 22 Aug invoice by 1500 and 500 of the 22 June invoice
To achieve this My client is invoicing customers with the billing document number as the 'reference document' no. When we recieve payments(from check lot) the payments have the reference document no of the invoice against which the payment was made(which is usually the current invoice). When payments are processed   by payment lot, it clears the current invoice since it finds a matching ref doc. However, it posts a credit open for the remaining amount(500 in this case) since the ref doc of payment is different from the ref doc of any open item left. Can we prevent this? Can the system ignore the ref doc and clear items as per the clearing variant?
One solution was to use automatic clearing to clear remaining amount. However, one big problem with automatic clearing is that if you group open items by any characteristic then clearing variant treats the credit open as a separate group. So it makes different groups of credit open and of open invoices and since it cant find both of these in any single group therefore no clearing takes place.
If this question seems too complicated then please feel free to ask details. Your help would be highly appreciated
Regards,
Adil Kapadia

Dear evolderen and Amlan,
Thanks for your reponses.
Now the problem is that if i put reference number in the payment then payment lot would only select those open item for clearing which have the same ref doc as the payment. So what will happen is that it will only clear the current invoice. It DOES NOT go to step 2 of clearing variant. It simply leaves a credit open.
What i would like is that the clearing variant goes to step 2 and clears items on a due date basis even if the ref doc of these open invoices do not match the ref doc of the payment
I hope i conveyed the problem properly
Regards,
Adil Kapadia

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