Remote not working properly with Apple TV...sporadic fuctioning

Hello,
I have no idea what caused this to happen, but both my remotes (I have one from my MacBook Pro and one from my AppleTV) seem to not work properly with AppleTV. It sometimes works but it is extremely frustrating as it only registers about 1 out of every 10-20 clicks then continues to remember the previous clicks therefore making it essentially impossible to select the desired menu/item. Basically it just seems like it's out of control!
I tested whether it was the remote or AppleTV that was causing the problem by running Front Row on my MacBook Pro and both remotes seem to navigate Front Row perfectly fine. They both act the same way with AppleTV, whether they are paired or not. It seems as though something happened with my AppleTV. This problem occurred randomly, with no specific cause I can think of.
Please let me know if any of you have ever experienced this problem and what your solution was, if any!
I have tried restoring to factory conditions, resetting settings, ran diagnostics, unplugged and replugged it, and nothing seems to be working!
Oh, and I just replaced the battery on one and have tried swapping batteries, etc.
HELP PLEASE!
Thank you,
Travis

The menus have never been as responsive as they used to since the 2.0 update in my opinion - basically AppleTV seems to cache/buffer remote click if it is busy or perhaps waiting for something to stream from itunes, and when resources become available it suddenly executes all command rapidly which makes it behave wildly in menus.
Usually happens I find after restarting the unit or if streaming drives have gone in to power saving modes and there's a delay while they wake up to feed the AppleTV.

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