RemoteApp Causing Flickering Issues.

I am working on testing for future migration from a Terminal Server environment a full Published Desktop set up using RD Web Access in a Server 2012. 
I am currently experiencing an issue with a program that once it launches, it is causing a type of screen flicker.  Now the flicker is not automatic, in fact the flicker only occurs when you click on the actual program itself within the window it runs
on. It then causes the background of your desktop to black out, and in some cases become an epileptics worst nightmare.
All other applications run fine no problems, it is just this one program that is having an issue.  The only thing that I know of that separates this application from the rest is that it is a .Net ran program.  This application runs from a TS environment
with no problems and runs as a Published app currently from one of our 2008 R2 servers without a problem.  But from this 2012 server this application has not been friendly.
My test environment includes the following: All VM servers.
1 Connection Broker Server
1 Web Access Server
2 Session Host Servers
Testing RDWeb applications from a Windows 8 Pro Client and a Windows 7 SP1 client
Both Clients experiencing the flicker problem.
I have scoured for answers for several days, with trying different options including trying to make tweeks to Windows experience, RemoteFX and other things to see if I can find a possible solution, so far I am coming up empty so I am trying to reach out
to the community to see if anyone has ran across this before or would be able to help me find a possible solution to this problem.

Might want to try posting in the RDS forum instead of the general 2012 forum -
http://social.technet.microsoft.com/Forums/windowsserver/en-US/home?forum=winserverTS
More TS experts over there.
.:|:.:|:. tim

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