Removing Advanced Pulldown from AVI files

I've recently switched from Vegas 4.0 to Final Cut Pro 5.1 and I'm trying to remove the advanced pulldown from my AVI files. I tried using Cinema Tools and it could not use the AVI. Then I tried using FCP tools/remove advanced pulldown option and the file went offline. Can sombody tell me how to do this?
Thanks

It wasn't out of sync before. I shot it on the Panasonic DVX100 in 24pa. Removed the pulldown and edited the film in Vegas. Now I want to transfer it to FCP change it to 16X9 and make a 16X9 24P DVD in DVD Studio Pro. When I did copy it back to tape from Vegas I used LP instead of SP so I could fit the entire movie on a mini dv tape. Maybe that has something to do with it not being able to remove the pulldown during capture? I think I'm going to try and split it up into 2 tapes and record sp mode.
Mac Pro 2.66   Mac OS X (10.4.7)   FCS

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    Some camcorders, such as the Panasonic AG-DVX100A (which is what I have), are designed to shoot in progressive mode at 24 fps (literally 23.98 fps) and then record the video to tape as a 60-field interlaced signal by applying a special kind of pull-down called advanced 2:3:3:2 pull-down. With previous versions of Final Cut, you could remove the redundant fields created by the camera’s pull-down, so that you can edit at 23.98 fps or 24 fps.
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    Height: 480
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    Resize Filter: Linear Filter
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    Multi-pass: Off, frame reorder: Off
    Scan Mode: Interlaced
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    Spatial quality: 100
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    I'm relatively new to 24PA, until now, I have captured quite a few projects now without any problems. The footage is always shot DVCPRO 50, I use the Panasonic AJ-SD93 Deck to capture the footage, selecting "remove advanced pulldown frames" in the FCP capture settings, and end up with great 23.98 progressive advanced footage.
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