REMOVING BLANK SPACE IN XML USING JDOM

<?xml version="1.0" encoding="UTF-8"?>
<Person >
<Employee1>
</Employee1>
<Employee2>
</Employee2>
<Employee3>
</Employee3>
</Person>
I want to remove <Employee2>
          </Employee2>
and my output should look like this
<Person >
<Employee1>
</Employee1>
<Employee3>
</Employee3>
</Person>
so i have written code
import org.jdom.Document;
import org.jdom.Element;
import org.jdom.JDOMException;
import org.jdom.input.SAXBuilder;
String str = "C://Employee.xml"
SAXBuilder builder = new SAXBuilder();
document = builder.build(str);
Element root = document.getRootElement();
Element employeeChild1 = root.getChild("Employee1");
Element employeeChild2 = root.getChild("Employee2");
employeeChild1.getParent().removeContent(employeeChild1);
employeeChild2.getParent().removeContent(employeeChild2);
File file = new File( fileName );
fos = new FileOutputStream( file );
Format format = Format.getRawFormat();
format.setOmitDeclaration(false);
format.setTextMode(Format.TextMode.PRESERVE);
outp = new XMLOutputter( format );
outp.escapeElementEntities(" ");
outp.output( document, fos );
fos.flush();
when i run this code my output comes like this in editplus
<Person >
<Employee1>
</Employee1>
<Employee3>
</Employee3>
</Person>
and in internet explorer it shows correct
<Person >
<Employee1>
</Employee1>
<Employee3>
</Employee3>
</Person>
i want to know how can i delete that blank line also because internet explorer adjust the settings and delete blank line but i want to view in editplus
Element is getting deleted but the index is not getting deleted
Please let me know Thanks in advance

Is this an InDesign question? You are talking about PDFs. Are they exported from InDesign, and you are asking how to fix them some way in InDesign before exporting again to PDF? Or are you placing PDFs into InDesign. If neither of these is your question, you may want to ask over in the Acrobat forum.

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    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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    import java.io.*;
    import java.util.*;
    import org.jdom.Document;
    import org.jdom.Element;
    import org.jdom.input.SAXBuilder;
    public class sample1 {
    public static void main(String[] args) throws Exception {
    // create a XML parser and read the XML file
    SAXBuilder oBuilder = new SAXBuilder();
    Document oDoc = oBuilder.build(new File("**xml file location**"));
    Element root = oDoc.getRootElement();
    System.out.println(root.getName());
    String tgtns= root.getAttributeValue("targetNamespace");
    System.out.println("tgt ns "+ tgtns);
    List list= root.getChildren("partnerLinks");
    Iterator it1= list.iterator();
    System.out.println("Iterator 1 - "+list.size());
    while(it1.hasNext()){
    Element partnerlinks = (Element)it1.next();
    List list2= partnerlinks.getChildren("partnerLink");
    System.out.println("iterator 2 - "+list2.size());
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    Result:
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    process
    tgt ns http://serena.com/CreateKBEntryService
    Iterator 1 - 1//expected and correct result that comes when I remove xmlns attribute from xml
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    Result with xmlns:
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    tgt ns http://serena.com/CreateKBEntryService
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    System.out.println("tgt ns "+ tgtns);
    Namespace ns = Namespace.getNamespace(
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