Render Help - Crashes and Re-Rendering

I have a project described in this thread that is driving me nuts
http://discussions.apple.com/message.jspa?messageID=10158713#10158713
Was able to get renders out finally but it depended on how I did it. Some went straight from the timeline. The ones that crashed would also crash when I tried from my Laptop which has FCS 3, but if I sent the timeline out through Compressor, no crashes and the playback was fine. Bought the self contained items back into the Tower and no signs of corruption. The issue became though that the only way to really proof things properly is on the Tower as of now, so the workflow bogged things down alot. (One color correction off, one transition off, then back to the laptop which became problematic since longer sections of about 1/2 or so could take 3-4 hours to export.)
So exported XML to work on the Tower and it seems to be working fine, but any changes cause the timeline to have to be re-rendered almost completely (if not in fact compeletely). All the clips in the timeline are individual clips from Color (and all named differently g1.mov, G2.mov, etc.) but even changing the length of a cross dissolve causes an extensive amount of rendering. There is some Smooth Cam on a few clips (already analyzed), a couple of positioning changes (scale up a percent or two) but nothing else.
I am used to adjusting small bits and when the transitions need to be re-rendered to check edits not a big deal, couple of seconds and done if I want to see smooth playback. But right now I am a bit of a loss. Figure I must be missing something. Next step is to set up a new partition on the Tower and install FCS 3 there since it seems pretty good on the lapptop tests, but would rather avoid that if possible and not willing to ditch FCP 6 on the Tower because have a few projects mid Stream and otherwise the system has been fiarly solid for me.
Well back to chugging coffee and after that a bottle of Jack Daniels. Figure even if I cannot get it working it will still stink, but then I would not care as much.
Thanks.

Had removed the smooth cam files that were generated, removed the filters and had the same issue. Re-analyzed again also, same issue. The part that is difficult is that it is very inconsistent. I had never run into a smooth cam issue before, is there something there I should be looking for? Perhaps I missed something going through the steps.

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