Repair Disk Permissions corrupted a secondary user account

I've read various threads on this topic but none that have solved my issue.
I have 4 accounts on my iMac. Account 1 is admin, Account 2 is "staff" and had access to almost everything, Account 3 is guest, Account 4 is for Apple TV streaming so we don't leave one of our accounts open while entertaining guests.
I was doing something that request that I run Repair Disk Permissions, which I did from the admin account. After doing so, Account 2 is pretty much read only: can't delete files off of the desktop, can't open certain applications, can't sync iphone to itunes, and many other little issues. One of the issues during iPhone sync is that it cannot write to address book <which there are many threads out there on just this as well>.
It seems to me that it's a permissions issue but repairing disk permission isn't helping, as that's what seems to have corrupted the account in the first place.
What is the most efficient way to resolve this? Should I create a new user account and move all the files over? If I do that, will iTunes sync ok with the iPhone or will it not recognize it and ask to wipe the data from the iPhone? What is the best sure-fire way to migrate Account 2 to a new user account and not lose anything in iTunes/iPhoto and still be able to sync with iPhone.
Thanks!

Open the Terminal in the /Applications/Utilities/ folder and run the following:
sudo chmod -R a+rX
followed by a space. Next, drag the folder into the Terminal window, press Enter, and type your password; nothing will appear in the Terminal while the password is being typed. If you want to be able to make changes to the folder as well, use rwX instead of rX. You may need to log out and back in for the changes to be recognized. To turn it off, use go-rwX after the -R.
(21396)

Similar Messages

Disk Utility & Repair Disk Permissions & Unknown User on External Seagate

I have a new iMac running Leopard and don't do stupid things to my mac. I have a couple external Seagate Freeagent drives but 1 of them is giving me a little trouble. So I figure, I'll try to repair disk permissions on it but the problem is when I go into Disk Utility, the Repair Disk Permissions option is NOT available. It's there, I just can't select it; it's grayed out. Why? I'm an admin! The other externals have this option available but not this one, so I'm not really sure what to do. I've about 300gb of family movies on it that I'd rather not wipe out just to be able to do a disk permission repair.
Whenever I do a command+i on the drive I do see an UNKNOWN user but this article, http://www.pcworld.com/article/145425-1/quickand_easy_folder_sharing_in105.html, leads me to believe that Apple hasn't done jack squat to allow us to fix the problem.
Thoughts? Suggestions? Thanks in advance!

mrpeepers wrote:
I don't think that statement is true.
I have 3 externals and can repair disk permission on all but 2. All my externals are for storage purposes and non have OSX installed, so that fact that I can repair disk permissions on them sort of contradicts what you say, however, the effectiveness of running a repair disk permission on a drive that doesn't have OSX may be nothing.
I don't know how you manage to repair permissions on externals without system files on them but what I said is quite true. Repair permissions ONLY checks permissions of system files against the database of correct permissions. It wouldn't know what to do with any other files and never touches them. It should also not be possible on non OS X drives. I've never seen it enabled on any of my external or secondary drives. I really wonder why and how it was enabled on your external drives.
I did have Tiger installed for 3 months before I got Leopard, but my externals have known nothing but Leopard.
That doesn't matter. the ownership of files on your external were set in Tiger and it remains in leopard. that's what causes the "unknown" user to show up.
The problem I'm having with one of the drives is that starting yesterday it's having difficulties mounting. Sometimes I restart the computer and the drive doesn't show. So in order to get it to show, I have to power down the external (which is and appears to be running) and then power it back up, and if that doesn't work, usually reseating the USB works.
Then again... My problems started happening after I installed CandyBar and applied some folder changes. I have since dumped it.
whatever problems you have with that external they have absolutely nothing to do with Candy bar. all candy bar does is change a few icon files on your main hard drive. that can have no effect on mountability of anything.
This sounds to me like a hardware problem with your external. the drive could be failing. the USB bus could be failing either on the drive or on the computer. One thing you could do is check to see if there are any firmware upgrades for that drive. Look at the manufacturer's website. also try testing the drive with another computer if you can.
On another note... Anyone use CandyBar and NOT have any problems or really like it? Maybe it was just a coincidence.
yes, I use it and REALLY like it. no problems whatsoever.

Failure to repair disk permissions

Hello fellow Mac users;
I really hope that someone here can help me with my issue.
I was doing some "spring cleaning" and deleted a whole bunch of unneeded files from my Mac, however I did not touch any system files!
When I restarted the Mac after all that it just showed the "thinking screen" the very first one with the Apple Symbol and it just "thought" for about 3 hours without bringing up the log in screen.
So I used my MAC OS X Installation Disk to get to the Disk Utility. I verified the disk and it said that the volume seemed to be okay. However when I tried to repair the disk permissions, I had a drop down window that said "permissions repair failure upon exit" and then in the main window it said the repair disk permissions was complete.
I'm scared now to try another restart and maybe crash my Mac totally! Help!!!
Thank you for any input!
Schnuckl

Hi,
Welcome to Apple Discussions.
I recommend saving all personal files including Address Book contacts, Mail accounts etc to an external disk or DVD immediately, at least for peace of mind should your system go down. Your cleaning exercise has likely caused an issue with installed receipts. Have a look in the folder Macintosh HD/Library/Receipts - all *.pkg installations (ie not those you drag-and-drop to install) store a receipt which tell OSX which permissions are required for the application. Disk Utility looks here when repairing permissions. If the names of your programs in /Library/Receipts are still present it's likely cleaning has corrupted the folders boms and db inside this directory. There is really only one option I personally would feel comfortable with, to perform a clean install (not archive and install) of OSX once I had saved my personal data. Don't bother backing up applications, those should all be clean installed as well on a fresh copy of OSX - if you need to remind yourself which 3rd party applications to reinstall afterwards, make a note beforehand including their serial numbers if licensed. If you own a paid-up .Mac account, goto System Preferences/.Mac/sync and select which essentials to back-up to your iDisk for convenient access following the reinstall.
I strongly advise against restarting your machine until you have saved everything you want to keep, should the worst happen.

Repair disk permissions for an external RAID drive?

Hello,
We are able to repair disk permissions on the hard drive, but can it be done on an external SCCI RAID drive? Is there software that is recommended that will repair and fix issues such as if the RAID drive was improperly removed without ejecting the drive? Or is that not needed?
Thanks,
Jordan

DiskWarrior repairs your directory, throws in some limited optimization (iPhoto's open in half the time is about all really), so if your "directory is out of order" it's not that big a deal really.
It's good to have on the shelf if you have a lot of Mac's, but ever since Tiger rolled around it seemed a lot of directory problems have disappeared on single user machines. It's pretty expensive for it's limited options.
With a RAID O (stripe) setup you should Disk Utility Erase w/Zero before setting up the RAID and laying data down. (in fact this is wise for all new drives at least once)
RAID O's should always be cloned (in the case of a boot RAID O) or backed up quite often because if one drive goes the whole set with data is lost.
Mirroring (RAID 1) is only necessary for extremely valuable one time data captures where a hard drive failure would be awlful. It doesn't make a good backup because any corruption, mistakes etc get immediatly written to the second drive.
Using automated cloning and backup software is better like (search Apple) DeJaVu. Auto clone the whole boot drive once a week and auto backup certain folders of files nightly.
Since cloning I haven't really too much need for drive maintainance software, if my RAID goes down for a data reason, (hasn't yet in 2 years of 24/7 operation) I simply option boot off the clone and repair/recover/reverse clone. I'm done in a hour, I even go out to eat or something while it's reverse cloning.
A good piece of software to have is (search Apple) OnyX, it's automation section will do a lot of cleanup and fixing certain things. Good to run it about once a month.
To find out more about cloning, visit Carbon Copy Cloner forums, they have donationware software too.

"Repair Disk Permissions" keeps showing the same permission differences

After the recent software updates, I suddenly cannot use my eFax Messenger. This happened once before, but I was able to fix the problem by running "Repair Disk Permissions" in Disk Utility.
This time "Repair Disk Permissions" did not fix the problem. Not only that, I noticed the same permission differences showing up again and again when I repeated Repair Disk Permissions.
Is the permissions database no longer accurate? Does anyone have any suggestions on how to resolve the permission differences? I notice that others have reported similar issues on this forum, but no definite resolutions have been posted.
Thanks for any help you can give me.

..."As long as the repair ends up with the message 'repairs complete' or words to that effect, you are OK."...
I don't know who started with the "repairs complete means everything is fine" business, but they were wrong and it is repeated far too often by too many people on this site.
Considering all of the messages erroneously being dismissed as "informational", it is ironic that the one message that is actually just "informational" is the one being given special significance.
The "repairs complete" message only means that the process has stopped. Try starting to repair permissions, then immediately click the "Stop permissions repair" button. Try logging in to a non-admin account and start a run -- when a password is requested, cancel. Try repairing permissions when there are problems with the permissions database. You will see messages such as "Stopped by user", "insufficient privileges" or "underlying task reported failure on exit, but in every case, the report will end with the "Permissions repair complete" message.
With respect to the OP's question, the overall "repair permissions" system as it stands in 10.5 has the appearance of an unfinished product (it received major revisions in the transition from 10.4). Without specific details, all anyone can say is that the error messages are likely false positives - except for any true positives that might be present among them.

Repair Disk Permissions ./usr?

This is the second time I've seen this after running my Repair Disk Permissions. Does anyone know what this means?
Group differs on ./usr, should be 0, group is 80
Owner and group corrected on ./usr
Permissions corrected on ./usr
I've had my Mac for 2 years and run my Repair Disk Permissions regularly - I've only seen this once before a few months ago and now.
Also, where would I find ./usr
Thanks for any help or info.
BJArt

I'm the only one that uses my Mac....
The operating system is made up of many small applications called processes. Each of these processes has a user (owner) and a group associated with it. Open the Activity Monitor in the Utilities folder and select All Processes in the drop down menu. You are not alone! You should see yourself running applications (processes) and at least root and nobody listed as users. You may be the only login user on your computer but the operating system contains many non-login users that control different processes. The root user primarily controls the operating system. In OS X the root user is a non-login user unless you make root a login user.
Who am I?
Every user has a primary group associated with that user. Let me do the "heavy lifting" from within the Terminal application. Of course you can try the command to see the ---text_output---. I'll use the command id to see who I am:
[purplehaze:~] fred% id
---text_output---
uid=501(fred) gid=501(fred) groups=501(fred), 79(appserverusr), 80(admin), 81(appserveradm)
I'm user 501(uid) whose shortname is fred. My primary group(gid) is 501 or fred. I belong to 4 groups. Because I belong to the group admin, I can install system software and perform tasks only the root user can do.
Who are they?
Let's look at the id for the root user:
[purplehaze:~] fred% id root
---text_output---
uid=0(root) gid=0(wheel) groups=0(wheel), 1(daemon), 2(kmem), 3(sys), 4(tty), 5(operator), 20(staff), 31(guest), 80(admin)
root's primary group (gid) is 0 or wheel. You can express users and groups in words or numbers. The root user belongs to many groups tied to running the operating system. Let's query the netinfo database for all the users on my computer showing the uid and gid in numbers, their shortname, where their home folder is, and their realname:
[purplehaze:~] fred% nireport . /users uid gid name home realname
---text_output---
-2 -2 nobody /var/empty Unprivileged User
0 0 root /var/root System Administrator
1 1 daemon /var/root System Services
99 99 unknown /var/empty Unknown User
25 25 smmsp /private/etc/mail Sendmail User
26 26 lp /var/spool/cups Printing Services
27 27 postfix /var/spool/postfix Postfix User
70 70 www /Library/WebServer World Wide Web Server
71 71 eppc /var/empty Apple Events User
74 74 mysql /var/empty MySQL Server
75 75 sshd /var/empty sshd Privilege separation
76 76 qtss /var/empty QuickTime Streaming Server
77 6 cyrus /var/imap Cyrus User
78 78 mailman /var/empty Mailman user
79 79 appserver /var/empty Application Server
501 501 fred /Users/fred Mark Jalbert
502 502 saraswati /Users/saraswati saraswati
Users above 500 are login users. User 501 was created when I installed my system software . User 502 is another login user on my system that I created. I have the ability to create other users because I belong to the group admin (80) Remember- only the root user or users who belong to the group admin can perform changes to the OS. Users below 500 where created by the operating system during installation and are responsible for running processes tied to the OS.
Hopefully, I haven't lost you in to much techno babble. You are not the root user but you are a member of the group admin. This allows you to take on the role of the root user and make changes to the operating system. As I said before- It's not a big deal whether the /usr folder has the group admin associated with it. If repairing permissions will not permanently change the group to 0 (wheel) then I suspect you may have some file corruption. From the Finder > Go menu > Go to Folder... type /usr and click to Go button to see inside the /usr folder.

Anyone clean their mac using the disk utility using the repair disk permissions??

anyone clean their mac using the disk utility using the repair disk permissions??

No. Threads don't hurt anything. If your computer is not functioning properly perhaps you need to try some basic maintenance. Let's start by having you do this:
Repair the Hard Drive and Permissions
Boot from your Snow Leopard Installer disc. After the installer loads select your language and click on the Continue button. When the menu bar appears select Disk Utility from the Utilities menu. After DU loads select your hard drive entry (mfgr.'s ID and drive size) from the the left side list. In the DU status area you will see an entry for the S.M.A.R.T. status of the hard drive. If it does not say "Verified" then the hard drive is failing or failed. (SMART status is not reported on external Firewire or USB drives.) If the drive is "Verified" then select your OS X volume from the list on the left (sub-entry below the drive entry,) click on the First Aid tab, then click on the Repair Disk button. If DU reports any errors that have been fixed, then re-run Repair Disk until no errors are reported. If no errors are reported click on the Repair Permissions button. Wait until the operation completes, then quit DU and return to the installer.
If DU reports errors it cannot fix, then you will need Disk Warrior and/or Tech Tool Pro to repair the drive. If you don't have either of them or if neither of them can fix the drive, then you will need to reformat the drive and reinstall OS X.
Next, try booting into Safe Mode then immediately restart normally. Safe mode is going to take a while so be patient. It's slow.
Next, create a new user account. Log out of your account then log into the new account. Try using iPhoto and the publishing button. Do they work now?
If you still have a problem, then do the following. If you don't want to go through the above then just start with the following and forget the others above.
Reinstall OS X without erasing the drive
1. Repair the Hard Drive and Permissions
Boot from your Snow Leopard Installer disc. After the installer loads select your language and click on the Continue button. When the menu bar appears select Disk Utility from the Utilities menu. After DU loads select your hard drive entry (mfgr.'s ID and drive size) from the the left side list. In the DU status area you will see an entry for the S.M.A.R.T. status of the hard drive. If it does not say "Verified" then the hard drive is failing or failed. (SMART status is not reported on external Firewire or USB drives.) If the drive is "Verified" then select your OS X volume from the list on the left (sub-entry below the drive entry,) click on the First Aid tab, then click on the Repair Disk button. If DU reports any errors that have been fixed, then re-run Repair Disk until no errors are reported. If no errors are reported click on the Repair Permissions button. Wait until the operation completes, then quit DU and return to the installer.
If DU reports errors it cannot fix, then you will need Disk Warrior and/or Tech Tool Pro to repair the drive. If you don't have either of them or if neither of them can fix the drive, then you will need to reformat the drive and reinstall OS X.
2. Reinstall Snow Leopard
If the drive is OK then quit DU and return to the installer. Proceed with reinstalling OS X. Note that the Snow Leopard installer will not erase your drive or disturb your files. After installing a fresh copy of OS X the installer will move your Home folder, third-party applications, support items, and network preferences into the newly installed system.
Download and install Mac OS X 10.6.8 Update Combo v1.1.

New macbook pro, safari won't open and repair disk permissions did nothing to help

Safari starts, blue bar moves about an inch in search bar, then stops. Then nothing. Tried repairing disk permissions to no avail. Safari still doesn't open. Whatever os x that is installed on new macbook pro's, since just bought on Sunday 10-14-12, is the operating software. The apple store there is no user manual. Strange. So here we are on another, older macbook pro, able to go on internet and see what answers or diagnoses others have tried and trued.

3 days old?, just pack the machine up and tell them you want another one, that this one is a lemon.
They will likely take your word for it and just give you another rather than you demand your money back instead.
If you wait too long then they say you should have brought it back sooner, now have to wait until it's fixed, only to give you more problems later.

Constantly having to repair disk permissions after hanging system

From the time I purchased this I've had ongoing issues with the java, flash, OS updates causing the computer to hang forever. Sometimes I end up having to press the off button because Command Q and Command/Option/Escape won't allow a force quit even after a 20 minute wait. I don't know enough about what's going on behind the boot up to know what's wrong. Here is a copy of my console log and this is exactly what they look like each time after I have gone in and done a disk verify, (says it's okay) and then repair disk permissions. I've had to boot to safe mode 3 times today and repair permissions due to this issue. There is nothing plugged into the computer except the power cord. The OS is up to date per Software Update and the only 3rd party software installed is SKYPE ...
1/25/11 5:45:58 PM SoftwareUpdateCheck[520] Checking for updates
1/25/11 5:45:58 PM storeagent[524] port created
1/25/11 5:46:27 PM com.apple.launchd[1] (com.apple.suhelperd[522]) Exited with exit code: 2
1/25/11 5:46:27 PM com.apple.launchd.peruser.501[88] ([0x0-0x3d03d].SoftwareUpdateCheck[520]) Exited with exit code: 102
1/25/11 8:21:42 PM [0x0-0x52052].com.skype.skype[613] Main starting with pid 613 parent pid 88
1/25/11 8:21:43 PM Skype[613] SkypeApplication::init called
1/25/11 10:56:56 PM com.apple.launchd[1] * launchd[1] has started up. *
1/25/11 11:09:29 PM com.apple.fontd[70] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:09:31 PM com.apple.WindowServer[72] Tue Jan 25 23:09:31 Troy-Lindstroms-MacBook.local WindowServer[72] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/25/11 11:09:32 PM com.apple.fontd[70] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:09:40 PM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/25/11 11:09:40 PM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/25/11 11:09:40 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/25/11 11:09:42 PM fontd[100] Database content version mismatch (stored(15) != expected(14))
1/25/11 11:09:47 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
1/25/11 11:10:09 PM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/25/11 11:10:12 PM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/25/11 11:10:13 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[110]) Exited: Killed
1/25/11 11:10:14 PM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
1/25/11 11:10:33 PM com.apple.launchd[1] * launchd[1] has started up. *
1/25/11 11:11:24 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/25/11 11:11:24 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/25/11 11:11:24 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/25/11 11:11:28 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/25/11 11:11:28 PM fontd[101] Failed to open read-only database, regenerating DB
1/25/11 11:11:34 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/25/11 11:11:40 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:11:48 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:11:49 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 90
1/25/11 11:11:51 PM Skype[116] SkypeApplication::init called
1/25/11 11:38:12 PM com.apple.WindowServer[69] Tue Jan 25 23:38:12 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/26/11 11:36:13 AM [0x0-0x6d06d].com.skype.skype[666] Main starting with pid 666 parent pid 90
1/26/11 11:36:14 AM Skype[666] SkypeApplication::init called
1/26/11 12:25:04 PM com.apple.launchd.peruser.501[90] ([0x0-0x6d06d].com.skype.skype[666]) Exited: Terminated
1/26/11 5:45:58 PM SoftwareUpdateCheck[867] Checking for updates
1/26/11 5:45:58 PM storeagent[870] port created
1/26/11 5:47:17 PM com.apple.launchd[1] (com.apple.suhelperd[869]) Exited with exit code: 2
1/26/11 5:47:17 PM com.apple.launchd.peruser.501[90] ([0x0-0x92092].SoftwareUpdateCheck[867]) Exited with exit code: 102
1/26/11 8:32:58 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:32:58 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 8:32:58 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:32:58 Troy-Lindstroms-MacBook.local Safari[143] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/26/11 8:33:10 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:33:10 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 8:33:24 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:33:24 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 10:48:32 PM com.apple.launchd.peruser.501[90] ([0x0-0x11011].com.apple.Safari[143]) Exited: Terminated
1/26/11 10:49:37 PM com.apple.launchd[1] (com.apple.suhelperd[1047]) Exited with exit code: 2
1/26/11 10:49:44 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/27/11 11:39:52 PM com.apple.launchd[1] * launchd[1] has started up. *
1/27/11 11:40:14 PM com.apple.launchd.peruser.501[84] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/27/11 11:40:15 PM com.apple.UserEventAgent-LoginWindow[77] ALF error: cannot find useragent 1102
1/27/11 11:40:15 PM com.apple.UserEventAgent-LoginWindow[77] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/27/11 11:40:15 PM SoftwareUpdateCheck[98] Checking for updates
1/27/11 11:40:15 PM com.apple.launchd.peruser.501[84] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/27/11 11:40:17 PM storeagent[119] port created
1/27/11 11:40:21 PM com.apple.WindowServer[65] Thu Jan 27 23:40:21 Troy-Lindstroms-MacBook.local WindowServer[65] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/27/11 11:40:27 PM [0x0-0xa00a].com.skype.skype[116] Main starting with pid 116 parent pid 84
1/27/11 11:40:29 PM Skype[116] SkypeApplication::init called
1/27/11 11:41:02 PM SoftwareUpdateCheck[98] Downloading "iTunes"
1/27/11 11:42:35 PM SoftwareUpdateCheck[98] Auto-download of "iTunes" SUCCESSFUL.
1/27/11 11:42:35 PM SoftwareUpdateCheck[98] Launching app
1/27/11 11:43:20 PM com.apple.launchd.peruser.501[84] ([0x0-0x6006].SoftwareUpdateCheck[98]) Exited with exit code: 102
1/28/11 9:51:59 AM com.apple.RemoteUI[589] CoreAnimation: rendering error 501
1/28/11 9:52:15 AM com.apple.RemoteUI[589] HTTP2 Streaming Reads ON
1/28/11 11:31:15 AM com.apple.launchd.peruser.501[84] ([0x0-0x10010].com.apple.Safari[134]) Exited: Terminated
1/28/11 11:42:21 AM com.apple.launchd[1] (com.apple.suhelperd[104]) Exited with exit code: 2
1/28/11 3:49:50 PM com.apple.launchd.peruser.501[84] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/28/11 3:49:50 PM com.apple.launchd.peruser.501[84] ([0x0-0x80080].com.apple.iTunesHelper[764]) Exited: Killed
1/28/11 3:50:10 PM com.apple.launchd.peruser.501[84] (com.apple.Dock.agent[88]) Exit timeout elapsed (20 seconds). Killing
1/28/11 3:53:36 PM com.apple.launchd[1] * launchd[1] has started up. *
1/28/11 3:55:16 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/28/11 3:55:16 PM com.apple.UserEventAgent-LoginWindow[82] ALF error: cannot find useragent 1102
1/28/11 3:55:16 PM com.apple.UserEventAgent-LoginWindow[82] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/28/11 3:55:25 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/28/11 3:55:27 PM com.apple.WindowServer[72] Fri Jan 28 15:55:27 Troy-Lindstroms-MacBook.local WindowServer[72] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/28/11 3:55:40 PM [0x0-0x8008].com.skype.skype[115] Main starting with pid 115 parent pid 90
1/28/11 3:55:41 PM Skype[115] SkypeApplication::init called
1/28/11 11:40:16 PM SoftwareUpdateCheck[419] Checking for updates
1/28/11 11:40:16 PM storeagent[422] port created
1/28/11 11:40:59 PM com.apple.launchd[1] (com.apple.suhelperd[421]) Exited with exit code: 2
1/28/11 11:40:59 PM com.apple.launchd.peruser.501[90] ([0x0-0x56056].SoftwareUpdateCheck[419]) Exited with exit code: 102
1/29/11 3:02:24 AM quicklookd[551] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/images-30.jpeg>' (Start date: 2011-01-29 03:02:04 -0800)
1/29/11 3:05:11 AM quicklookd[555] [QL] 'Creating thumbnail - cancelled' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/About Downloads.pdf>' (Start date: 2011-01-29 03:03:35 -0800)
1/29/11 3:05:52 AM quicklookd[560] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/About Downloads.pdf>' (Start date: 2011-01-29 03:05:32 -0800)
1/29/11 3:06:44 AM quicklookd[563] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/images-3.jpeg>' (Start date: 2011-01-29 03:06:22 -0800)
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] ([0x0-0x86086].com.apple.Preview[708]) Exited: Killed
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] ([0x0-0x8a08a].com.apple.systemevents[721]) Exited: Killed
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/29/11 6:37:13 AM com.apple.launchd[1] * launchd[1] has started up. *
1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/29/11 6:37:42 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/29/11 6:37:50 AM com.apple.WindowServer[54] Sat Jan 29 06:37:50 Troy-Lindstroms-MacBook.local WindowServer[54] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/29/11 6:37:52 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/29/11 6:38:03 AM [0x0-0x8008].com.skype.skype[113] Main starting with pid 113 parent pid 89
1/29/11 6:38:05 AM Skype[113] SkypeApplication::init called
1/29/11 12:14:57 PM [0x0-0x36036].com.apple.CharacterPaletteIM[330] objc[330]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
1/29/11 12:43:40 PM [0x0-0x39039].com.apple.CharacterPaletteIM[346] objc[346]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
1/29/11 6:52:46 PM com.apple.launchd.peruser.501[89] ([0x0-0xf00f].com.apple.Safari[131]) Exited: Terminated
1/29/11 6:52:59 PM com.apple.launchd.peruser.501[89] ([0x0-0x1e01e].com.apple.AddressBook[206]) Exited: Terminated
1/29/11 6:52:59 PM loginwindow[29] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
1/29/11 6:52:59 PM com.apple.loginwindow[29] 2011-01-29 18:52:59.446 loginwindow[29:107] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
1/29/11 6:53:14 PM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 9:17:52 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 9:19:51 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:19:51 AM com.apple.WindowServer[68] Sun Jan 30 09:19:51 Troy-Lindstroms-MacBook.local WindowServer[68] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 9:19:54 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] ALF error: cannot find useragent 1102
1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 9:20:00 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 9:20:02 AM fontd[98] Database content version mismatch (stored(15) != expected(14))
1/30/11 9:20:04 AM SoftwareUpdateCheck[94] Checking for updates
1/30/11 9:20:05 AM storeagent[102] port created
1/30/11 9:20:08 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/30/11 9:20:38 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 9:20:39 AM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
1/30/11 9:20:44 AM com.apple.launchd[1] (com.apple.suhelperd[101]) Exited with exit code: 2
1/30/11 9:20:45 AM com.apple.launchd.peruser.501[86] ([0x0-0x6006].SoftwareUpdateCheck[94]) Exited with exit code: 102
1/30/11 9:20:49 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/30/11 9:20:55 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/30/11 9:21:16 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 9:22:04 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 9:22:07 AM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 9:22:07 AM fontd[101] Failed to open read-only database, regenerating DB
1/30/11 9:22:11 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:22:13 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/30/11 9:22:19 AM com.apple.WindowServer[69] Sun Jan 30 09:22:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 9:22:26 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:22:26 AM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
1/30/11 9:22:28 AM Skype[116] SkypeApplication::init called
1/30/11 10:33:53 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/30/11 10:34:02 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 10:34:26 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 10:34:28 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[107]) Exited with exit code: 1
1/30/11 10:34:32 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
1/30/11 10:34:36 AM Skype[112] SkypeApplication::init called
1/30/11 3:37:45 PM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 3:50:19 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 3:50:19 PM com.apple.WindowServer[69] Sun Jan 30 15:50:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 3:50:21 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 3:50:52 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] ALF error: cannot find useragent 1102
1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 3:53:14 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 3:53:15 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 3:53:18 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
1/30/11 3:53:20 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/30/11 4:00:53 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 4:12:07 PM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 4:12:56 PM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 4:12:59 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 4:12:59 PM fontd[101] Failed to open read-only database, regenerating DB
1/30/11 4:13:06 PM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/30/11 4:13:15 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 4:13:21 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 4:13:21 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
1/30/11 4:13:23 PM Skype[116] SkypeApplication::init called
1/30/11 5:12:33 PM com.apple.WindowServer[69] Sun Jan 30 17:12:33 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 5:12:34 PM com.apple.RemoteUI[169] CoreAnimation: rendering error 501
1/30/11 5:12:46 PM com.apple.launchd.peruser.501[89] ([0x0-0x9009].com.skype.skype[116]) Exited: Terminated
1/30/11 5:12:49 PM com.apple.RemoteUI[169] HTTP2 Streaming Reads ON
1/30/11 5:13:12 PM System Preferences[175] .scriptSuite warning for result type of command 'timedLoad' in suite 'SystemPreferences': the type NSNumber ('long') doesn't match the result Apple event code ('doub').
1/31/11 12:17:59 AM com.apple.launchd[1] (com.apple.aslmanager) Throttling respawn: Will start in 5 seconds
1/31/11 12:54:05 AM com.apple.launchd.peruser.501[89] ([0x0-0x18018].com.apple.Safari[180]) Exited: Terminated
1/31/11 1:31:00 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/31/11 1:31:24 AM com.apple.launchd[1] * launchd[1] has started up. *
1/31/11 1:33:28 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:33:29 AM com.apple.WindowServer[67] Mon Jan 31 01:33:29 Troy-Lindstroms-MacBook.local WindowServer[67] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/31/11 1:33:31 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] ALF error: cannot find useragent 1102
1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/31/11 1:33:48 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/31/11 1:33:50 AM fontd[96] Database content version mismatch (stored(15) != expected(14))
1/31/11 1:33:54 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[105]) Exited with exit code: 1
1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/31/11 1:44:00 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[107]) Exited: Killed
1/31/11 1:44:10 AM com.apple.launchd[1] * launchd[1] has started up. *
1/31/11 1:44:43 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/31/11 1:44:43 AM fontd[95] Database content version mismatch (stored(15) != expected(14))
1/31/11 1:44:43 AM fontd[95] Failed to open read-only database, regenerating DB
1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/31/11 1:44:45 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
1/31/11 1:44:45 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:44:57 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:44:58 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
1/31/11 1:45:00 AM Skype[112] SkypeApplication::init called
1/31/11 2:00:28 AM com.apple.launchd[1] (com.apple.suhelperd[141]) Exited with exit code: 2
Can anyone see the issue or tell me what I need to do to fix this thing???

Which MacBook model? Did it come with OSX 10.6 or did you upgrade it?

Repair Disk Permissions Issues

I'm not sure I am posting this in the correct community but here goes . . .
I have a 17" Macbook Pro running the latest version of Snow Leopard. It is almost 2 years old and I have 4 gb RAM.
Recently, it seems to be slowing down and I have to run repair disk permissions 2-3 times a week to recoup a little speed. I also delete my Firefox cache regularly to try to gain a little there. I do make a few videos in iMovie and initially I thought that was the problem but this week I have not really worked in iMovie much and it is still slow. There seems to be some issues in the log of the repair permissions. I hope they show in this image. I don't know what these mean or how to fix them. It is the "permissions differ" entries I am confused about.

You can ignore those permissions per support article
http://support.apple.com/kb/TA21090
Since you brought up iMove, I suspect your storage is nearly full as this most certainly causes the computer to slow down. video files are the biggest culprit.
Look in your Activity Monitor and reduce the drive space by copying to a external, Disk Utility HFS+ formatted external powered drive of unnecessary files so your boot drive is ideally below 50% filled (yea I know but the computer slows down after that) and not more than 75% filled.
Once you have done that. Get another newer external powered HFS drive and download the free Carbon Copy Cloner and clone the internal drive to the external.
Hold option and boot off the external clone, test it out then use Disk Utility to erase the internal and then reverse clone the external onto the internal, this will defragment and optimize your drive so the OS and programs are on the fast part of the drive, not the slow parts.
Reboot into the internal and run off of the free OnyX's maintainence and cleaning aspects and reboot.
http://www.titanium.free.fr/
Sir speedy machine here we come!
Now of course you may have other issues that could be causing your slow down, like not enough RAM or some sort of failed process or leftover program, tweaks or simply a slow Internet.
You can opt to simply reinstall OS X 10.6 ( by holding c and booting off the installer disk ) over your installed version (doesn't touch files or programs) then immediatly Software Updating until clear, that will clean anything hanging out in OS X.
If you still have slowdowns, then it's in what geeks call "User land" basically something installed outside of root, like a program or only runs in user, not in OS X.
For that you need to create a new user, transfer your files via the Shared Drop and wean yourself off the old user and finally delete it. Also install all new versions of your third party programs removing the originals first.
That should do it.

Does anyone know what this Repair Disk Permissions stuff means?

Safari hung on me today, so i decided to repair disk permissions. This text keeps coming up. Is my computer gonna explode or something? Thanks in advance for any help...my OS is 10.6.7
Repairing permissions for “Macintosh HD”
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/dt.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/dt.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jce.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jce.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jconsole.ja r", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jconsole.ja r".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/management- agent.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/management- agent.jar".
User differs on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib", should be 0, user is 95.
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/jce.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/jce.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/management -agent.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/management -agent.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/security/b lacklist", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/security/b lacklist".
User differs on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries", should be 0, user is 95.
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries".
Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Home/lib/security/cacerts", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/Support/Deploy.bundle/Contents/Home/lib/security/cacerts".
Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Resources/Java/deploy.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/Support/Deploy.bundle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Resources/JavaPluginCocoa.b undle/Contents/Resources/Java/deploy.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/Support/Deploy.bundle/Contents/Resources/JavaPluginCocoa.b undle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle", should be drwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib".
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Permissions repair complete

Pleasant dreams.
Please note the items listed under Legend in the right sidebar of this page.

Keep having to 'Repair Disk permissions'.

My MBP (2.53 GHZ Intel Core i5, running 10.6.8) keeps running slow, and only improves after Repairing Disk Permissions. I had to run this again this morning - and I'd only ran Permissions repair two days ago! This is what I got;
'Repairing permissions for “Macintosh HD”
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle", should be drwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib".
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Permissions repair complete'
The other day the list was probably 3 times this length, often ending with '...but they are 80'.
Any ideas?
Thanks

Have you run Repair Disk?
http://support.apple.com/kb/TS1417
Have you checked SMART status?
Check the S.M.A.R.T. status on your HD:Applications > Utilities > Disk Utility > in the panel at left, selectthe first item in the list/your HD mechanism>look at the bottom of the mainwindow next to S.M.A.R.T. status and see if it says “Verified” or somethingmore ominous like “Failing.”
Have you run background maintenance scripts?
http://docs.info.apple.com/article.html?artnum=107388
Have you checked in Activity Monitor to see if any processes are using a high ammount of CPU?
Sometimes a process can run amok and use more of the CPU than it should, potentially causing a slowdown and/or heat issues and/or other issues. To check on this, first use your Mac as you normally would, the longer the better (checking this right after starting up may not show you anything). After you’ve used your Mac for awhile (again, the longer the better), go to Applications > Utilities > open Activity Monitor > in the top menu at right, select All Processes in the drop downmenu > click on the column heading titled % CPU (this will update continuously, showing the percentage each process is using) > toward the bottom left of the window, click on CPU (this will show % Idle, which will also tell you how much of the CPU is being used).
Have you done an SMC Reset?
http://support.apple.com/kb/HT3964
And 4GB used, 2GB free btw...
By chance is it referring to RAM usage?

Repair disk permissions.SUID issue- Unable to get some applications to load

I need some help in repairing disk permissions ...It is affecting an application I am trying to install (1Password) in which I cannot due to applications being run by user = root.
Below is my disk verification log:
I would appreciate someone walking me through this SUID issue.
I cannot install 1Password app as it is my understanding that the user Root will not allow these permissions.
here is my Disk Verification Log;
Verify permissions for “Hard Disk”
Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Reso urces/Locum" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Install.framework/Versions/A/Resources/runner " has been modified and will not be repaired.
Permissions differ on "private/var/log/secure.log", should be -rw------- , they are -rw-r----- .
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/readconf ig" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/writecon fig" has been modified and will not be repaired.
Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Group differs on "Library/PreferencePanes", should be 0, group is 80.
Permissions differ on "Library/PreferencePanes", should be drwxr-xr-x , they are drwxrwxr-x .
ACL found but not expected on "Applications/Utilities".
ACL found but not expected on "Applications".
ACL found but not expected on "Library".
ACL found but not expected on "Library".
Permissions verification complete

Hi gmckay,
The "Waring:SUID file..." messages are only warning message and are not a concern. The SUID bit is supposed to be set on those file. This is a glitch in the installer program- that does not update the installer database with the correct SHA1 digest for those files. The secure.log entry is a glitch in the newsyslog.conf file that sets the permissions on the secure.log less permissive than those recorded in the installer database. The ACL warning messages are caused by another glitch in the installer database. What concerns me are the double ACL messages for "LIbrary". Is this a typo?

Repair Disk Permissions: is it a safe operation ?

Hello,
I'm preparing for the 101 course and, reading about the Verify/Repair disk permissions utility, I wanted to test it on my mac.
I launched the verification on it and I see "lot" of unexpected entries (see below):
Verifying permissions for “Macintosh HD”
Permissions differ on “System/Library/User Template/ar.lproj”; should be drwxr-xr-x ; they are drwx------ .
User differs on “usr/share/collabd/coreclient/public/locales/zh_CN.lproj”; should be 94; user is 0.
Group differs on “usr/share/collabd/coreclient/public/locales/zh_CN.lproj”; should be 94; group is 0.
User differs on “usr/share/collabd/webauthd”; should be 94; user is 221.
Group differs on “usr/share/collabd/webauthd”; should be 94; group is 221.
User differs on “usr/share/collabd/webauthd/locales”; should be 94; user is 221.
Group differs on “usr/share/collabd/webauthd/locales”; should be 94; group is 221.
User differs on “usr/share/collabd/webauthd/locales/zh_CN.lproj”; should be 221; user is 0.
Group differs on “usr/share/collabd/webauthd/locales/zh_CN.lproj”; should be 221; group is 0.
Group differs on “Library/Java”; should be 0; group is 80.
Permissions differ on “Library/Java”; should be drwxr-xr-x ; they are drwxrwxr-x .
Permissions differ on “System/Library/User Template/cs.lproj/Pictures/iChat Icons”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “System/Library/User Template/hu.lproj/Pictures/iChat Icons”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “System/Library/User Template/tr.lproj/Pictures/iChat Icons”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
User differs on “usr/share/collabd/coreclient/locales/zh_CN.lproj”; should be 94; user is 0.
Group differs on “usr/share/collabd/coreclient/locales/zh_CN.lproj”; should be 94; group is 0.
Permissions differ on “usr/share/devicemgr/frontend/admin/zh_TW.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/zh_CN.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/ru.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/ko.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/nl.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/it.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/es.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/fr.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/de.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/ja.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Group differs on “Library/Documentation/Applications/iTunes/Acknowledgements.rtf”; should be 0; group is 80.
Permissions differ on “Library/Documentation/Applications/iTunes/Acknowledgements.rtf”; should be -rw-r--r-- ; they are -rw-rw-r-- .
Group differs on “Library/Documentation/iPod/Acknowledgements.rtf”; should be 0; group is 80.
Permissions differ on “Library/Documentation/iPod/Acknowledgements.rtf”; should be -rw-r--r-- ; they are -rw-rw-r-- .
Group differs on “.DS_Store”; should be 80; group is 0.
Permissions differ on “.DS_Store”; should be -rw-rw-r-- ; they are -rw-r--r-- .
User differs on “Applications/.DS_Store”; should be 0; user is 501.
Permissions differ on “Applications/.DS_Store”; should be -rw-rw-r-- ; they are -rw-r--r-- .
Group differs on “Library/Preferences/com.apple.alf.plist”; should be 80; group is 0.
ACL found but not expected on “private/var/root”
ACL found but not expected on “private/var/root/Library”
ACL found but not expected on “private/var/root/Library/Preferences”
Permissions verification complete
It seems to me that these are all related to system files, things that weren't changed by third-party applications or by me.
The question are:
- why an untouched system would have errors in the permissions ?
- is it safe, since I haven't got until now problems with permissions on that os, to repair these errors or it's better to leave everything as it is now ?
Ciao,
Nicola

Hello Nicola,
You raise a touchy area for discussion...some users on here are very opposed to repairing permissions, others are strongly in favor of repairing permissions before and after software installation.
The permission statements you see do not generally adversely affect the system but they are not the permissions disk utility has been told to expect. Those may be artifacts from the installation process and why we have been told in the past to always repair permissions after installing/updating the operating system.
Since you ran verification, if you run repair you will end up cleaning up a lot of this "discrepancies" with what disk utility wants to see.
Repair permissions is safe, and I tend to use it every time I upgrade or install software.
Ralph

When I repair disk permissions I get the following:Repairing permissions for "MacIntosh HD" Determining correct file permissions. Permissions differ on ./Library/Widgets, should be drwxr-xr-x , they are drwxrwxr-x Owner and group corrected on ./Library/W

Repairing permissions for “MacIntosh HD”
Determining correct file permissions.
Permissions differ on ./Library/Widgets, should be drwxr-xr-x , they are drwxrwxr-x
Owner and group corrected on ./Library/Widgets
Permissions corrected on ./Library/Widgets
Permissions differ on ./System/Library/User Template, should be drwx------ , they are drwxr-xr-x
Owner and group corrected on ./System/Library/User Template
Permissions corrected on ./System/Library/User Template
Group differs on ./usr/bin/fetchmail, should be 0, group is 6
Permissions differ on ./usr/bin/fetchmail, should be -rwxr-xr-x , they are -rwxr-sr-x
Owner and group corrected on ./usr/bin/fetchmail
Permissions corrected on ./usr/bin/fetchmail
Permissions differ on ./usr/lib/php/build/Makefile.global, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/Makefile.global
Permissions corrected on ./usr/lib/php/build/Makefile.global
Permissions differ on ./usr/lib/php/build/acinclude.m4, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/acinclude.m4
Permissions corrected on ./usr/lib/php/build/acinclude.m4
Permissions differ on ./usr/lib/php/build/mkdep.awk, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/mkdep.awk
Permissions corrected on ./usr/lib/php/build/mkdep.awk
Permissions differ on ./usr/lib/php/build/phpize.m4, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/phpize.m4
Permissions corrected on ./usr/lib/php/build/phpize.m4
Permissions differ on ./usr/lib/php/build/scan_makefile_in.awk, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/scan_makefile_in.awk
Permissions corrected on ./usr/lib/php/build/scan_makefile_in.awk
Permissions differ on ./usr/lib/system/libmathCommon.A.dylib, should be -r-xr-xr-x , they are -rwxr-xr-x
Owner and group corrected on ./usr/lib/system/libmathCommon.A.dylib
Permissions corrected on ./usr/lib/system/libmathCommon.A.dylib
Permissions differ on ./usr/libexec/dumpemacs, should be -r-sr-xr-x , they are -r-xr-xr-x
Owner and group corrected on ./usr/libexec/dumpemacs
Permissions corrected on ./usr/libexec/dumpemacs
Permissions repair complete
The privileges have been verified or repaired on the selected volume
Then I sometimes get the brown screen that states,You must re-start your computer.
I have already zeroed out the hard drive and re-installed Panther and the upgrade Tiger disc.
I repair permissions using the Tiger disc upgrade.
Can anyone help me with this??

> I repair permissions using the Tiger disc upgrade.
One thing to note... When running Repair Disk Permissions, it is best to run it while started up normally, from your normal startup disk, not from a Mac OS X installation disc. The only time you should run it while started up from an installation disc is if some problem is preventing you from starting up normally. OTOH, Repair Disk can only be used when starting up from a different disk (such as an installation disc).
So, I would start up normally, run Disk Utility, and use Repair Disk Permissions on your normal startup disk.
NOTE: Repair Disk Permissions often gives alerts messages that can be ignored. They are more "informational," not serious errors.
http://support.apple.com/kb/TS1448
You should still run it periodically. When you run it, what needs to be repaired has been repaired; consider the rest of it an FYI. I've never experience a problem, where a Repair Disk Permissions message actually caused a problem. But, if you ever get an error while running Repair Disk (or Verify Disk), that is usually a serious problem.

Repair Disk Permissions corrupted a secondary user account

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