Repair Disk Permissions is Grayed Out

I have a 2011 iMac with an internal SSD as the boot and another internal 2TB drive. I was working with an HTML file but was unable to display any JPGs/PNGs file in any of the browsers correctly. The files are located on the 2TB drive. I think this could be a permissions issue. If I copy and access those same files on the boot drive instead, the JPGs/PNGs displayed fine via HTML. I launched Apple's Disk Utility and when I select the 2TB, both Permissions buttons are grayed out. The Verify and Repair Disk buttons are working fine. I ran those anyway. No problems there.
So why are both Permissions buttons grayed out for the internal 2TB and how can I fix this?

Thanks for clarifying. I am still trying figure out what is it about the internal SSD boot drive and the 2TB drive that seems to interfere with displaying the pixel base files. This is the scenario.
I am following a tutorial on Lynda.com called "Design the Web: Illustrator to Animated HTML5 Canvas." I am using a plug in called Ai2CanvasMac with Adobe Illustrator, It essentially generates an HTML file from an Illustrator file. The Illustrator file has an embedded PNG file as a background image and a small vector graphic in front and centered. After the plug-in generates the HTML file, it automatically opens the file up in the browser. This is where I am getting mixed results.
If the files I am working with are on the 2TB, the PNG does not display in any of the browser correctly. If I work with the same files on the SSD boot drive. The PNG displays fine.
Any ideas what could be the problem?

Similar Messages

Repair Disk Permissions Unavailable in Disk Utility

I just went to repair the Disk Permissions on one of my 4 internal hard drive and the tabs for Verify & Repair Disk Permissions were grayed out. I checked the other internal hard drives as well as my external drives connected via SATA and Firewire and the tabs are all the same. The only drive that the tabs are available is my internal startup drive. I have a memory that these tabs to verify and repair have always been available on all drives - am I remembering incorrectly? Any ideas? Thanks.

roam:
Repair Permissions is only available to do, on the drive that you are booted into.
I wondered about that, and before my previous post I tested it by launching DU while booted from my internal HDD and connected to an external FW HDD with two partitions, as well as to a USB HDD with my Time Machine backup. If I selected the FW HDD (Manufacturer ID) or either volume on it I could Verify or Repair Disk Permissions, as well as Verify or Repair Disk. It will Repair the TM backup, but not do anything with Disk Permissions. Of course, I am booted from Snow Leopard and did not test this while booted from an earlier OS, but, if I recall correctly, it worked the same way in Tiger and Panther.
cornelius

Repair disk permissions grayed out

Hello,
I have a WD External Drive that I use for Time Machine backup. Recently have had no backup (about 20 days) and finally decided to look into it. I use this one at work and have brought it home to work on what is wrong. Have tried to repair disk permissions, but option is grayed out. I have however been able to repair disk. It took 8 hours to repair disk which reported no problems.
I have tried to copy files from the backup disk to another disk, but it won't work (don't remember exact message-but it was something odd).
From another thread, I was trying to do this command:
sudo /usr/sbin/chown _installer:admin /Library/Receipts/db/a.receiptdb
and got this response:
Home-Power-Mac-G5:~ paul$ sudo /usr/sbin/chown _installer:admin /Library/Receipts/db/a.receiptdb
Password:
paul is not in the sudoers file. This incident will be reported.
so, I then try this command:
ls -leO /Library/Receipts/db/a.receiptdb
and get this response:
-rw------- 1 _installer wheel - 266133504 Dec 15 22:03 /Library/Receipts/db/a.receiptdb
WHAT do I do now? I want to first back up all files then reformat drive to start anew.

Hi Christopher Graham;
Since Repair Permission is repair the permissions for the system there has to be a system on the partition in order to not have that button ghosted. As far as Disk Utility can tell a Time Machine backup is not a System hence it is ghosted.
Allan

I recently repaired disk permissions on my mac HD and now my on-board speakers wont work, the icon is greyed out and only works when my headphones are plugged in.

I recently repaired disk permissions on my mac HD and now my on-board speakers wont work, the icon is greyed out and only works when my headphones are plugged in

Try to put your headphones several times in and out from your connection, might be the switch is stuck. Normally it should work again while trying to plug the headphones in and out!

CD Ejects with Error Code 9 - Repair Disk Permissions Greyed Out

History:
Superdrive 815CA Ejects Blank CD's to be burned w/ Error Code 9
Exact Text:
The Operation Could not be completed an unexpected error occured(error Code 9)
The CD Ejects, but the Ghost Icon of the CD image would stay
Plays previously burnt CD's/DVD's as well as market CD's/DVD's fine
Went to Disk Utility
Repair Disk Permissions(RDP) & Verify Disk Permissions(VDP) greyed out so you can'tclick them when I click on first aid
The only time they weren't greyed was when I clicked to repair the Ghost Icon CD, of which the actual CD was ejected in the first place
I cleaned the lens umteen million times - same problem
I did the Hardware repair check w/the startup CD, same problem
I bought a NEW frickin' Superdrive and installed it successfully- same problem
I went to system preferences and selected the option to open the blank CD in I tunes.
This worked for burning MP3's no problem
HOWEVER it will not open in the finder, so I can't save any data from my desktop on to a CD/DVD, so my hard Drive is getting clogged
Got a Hammer?

I loaded at least 20 different BLANK CD's to experiment with.
The same CD's which get spat out when I open it in finder, burn fine when i open them up in I tunes
I've already bought a new drive and the same problem occurs as when i had the old drive (can't open in finder), so i believe the bad drive and bad CD premise has been troubleshot.
It seems like it won't recognize the Drive or CD when i try to launch a CD from the finder
The blank CD's burn music fine when I open it up in I tunes, but not when I try to open it up in the finder when i try to put data on the CD's.

Repair disk permissions "greyed out"

We have a G5 with 2 internal hard drives that we use as a server. I can run "repair disk permissions" on one drive, but on the other the choices for repair or verify disk permissions is greyed out. Why is this and how can I repair the permissions on the one drive?

2 possibilities come to mind.
(1) The disk in question does not have Mac OS X installed on it (required for permission repair).
(2) The disk in question does not have suitable files in the /Library/Receipts folder (such a folder doesn't exist, I guess, if OS X isn't there - see (1)).
charlie

How to repair disk permissions inside Time Machine?

I need to restore my .sites file for iWeb from Time Machine, but when I try I get the following error:
"The operation can't be completed because you don't have permission to access some of the items." What IS restored are a few (10 or so) .jpg files that were part of my site that once contained thousands of pictures, dozens of movies, and three years of work. The file details inside Time Machine ("Quick View") is 972MB, but again -- what is actually restored is only about 10 pics of a mb each.
Does anyone know how to repair disk permissions for a file inside Time Machine? In Disk Utility the button to repair permissions is grayed out when I select Time Machine volume.
Much thanks in advance!

I have the same issue (and circumvented it by copying the files with "cp" from the unix shell). The permissions on the TM disk don't really look wrong, and the fact that I can copy the files means that they aren't read protected.
There seems to be some serious bug in Time Machine here, my guess is that the TM restore operation somehow does things in the wrong order (like copying with preserved access lists to a temporary location and then try to move the files from there. This won't work since the files will be protected with access lists from accidental removal on the TM disk).
More discussion in this thread:
http://discussions.apple.com/thread.jspa?threadID=2164188

Disk Utility can't Verify Disk Permissions" and "Repair Disk Permissions"

I tried to run "Verify Disk Permissions" and "Repair Disk Permissions" on an external partition, but they all grayed out! "Verify Disk" and "Repair Disk" were fine! The "Owners Enabled" is "Yes". Why they were grayed out ?!
Get Info on this volume showed:
Ownership & Permissions:
You can "Read & Write"
Details:
Owner: admin
Access: "Read & Write"
Ignore ownership on this volume: checked or unchecked STILL grayed out!
Other partitions on the SAME drive are able to do "Very Disk Permissions" and
"Repair Disk Permissions" (as they are NOT grayed out !) The ONLY difference
between the one (CAN'T) and the rest partitions is that one (CAN'T) has
owner by "admin", and the rest partitions (OK to veryify pewrmissions) are owner
by "system". ANY CLUE ?
-DC

The options to verify or repair permissions are only available on a disk with Mac OS X 10.2 or newer installed, and all Mac OS X versions set the owner of the partition containing them to system when installed.
(24684)

Unusual repair disk permissions!

I'm fa-reakin' out! For some reason, my new iMac started being real buggy. I ran a 'repair disk permissions' since the 'repair disk' was grayed out (?), and this is what was recorded in the log:
Does any one know what's up? What is a SUID file and how have I corrupted it? Any help would be greatly appreciated!
Repairing permissions for “Macintosh HD”
Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Reso urces/Locum" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Install.framework/Versions/A/Resources/runner " has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/readconf ig" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/writecon fig" has been modified and will not be repaired.
Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.

This is normal...
You downloaded the 10.5.1 update from Software Update.... Yes?
If you download the large 110 MB update file for 10.5.1 directly from Apple, you will get rid of all the SUID except for one...
Apple says this is nothing to worry about.

Disk Utility & Repair Disk Permissions & Unknown User on External Seagate

I have a new iMac running Leopard and don't do stupid things to my mac. I have a couple external Seagate Freeagent drives but 1 of them is giving me a little trouble. So I figure, I'll try to repair disk permissions on it but the problem is when I go into Disk Utility, the Repair Disk Permissions option is NOT available. It's there, I just can't select it; it's grayed out. Why? I'm an admin! The other externals have this option available but not this one, so I'm not really sure what to do. I've about 300gb of family movies on it that I'd rather not wipe out just to be able to do a disk permission repair.
Whenever I do a command+i on the drive I do see an UNKNOWN user but this article, http://www.pcworld.com/article/145425-1/quickand_easy_folder_sharing_in105.html, leads me to believe that Apple hasn't done jack squat to allow us to fix the problem.
Thoughts? Suggestions? Thanks in advance!

mrpeepers wrote:
I don't think that statement is true.
I have 3 externals and can repair disk permission on all but 2. All my externals are for storage purposes and non have OSX installed, so that fact that I can repair disk permissions on them sort of contradicts what you say, however, the effectiveness of running a repair disk permission on a drive that doesn't have OSX may be nothing.
I don't know how you manage to repair permissions on externals without system files on them but what I said is quite true. Repair permissions ONLY checks permissions of system files against the database of correct permissions. It wouldn't know what to do with any other files and never touches them. It should also not be possible on non OS X drives. I've never seen it enabled on any of my external or secondary drives. I really wonder why and how it was enabled on your external drives.
I did have Tiger installed for 3 months before I got Leopard, but my externals have known nothing but Leopard.
That doesn't matter. the ownership of files on your external were set in Tiger and it remains in leopard. that's what causes the "unknown" user to show up.
The problem I'm having with one of the drives is that starting yesterday it's having difficulties mounting. Sometimes I restart the computer and the drive doesn't show. So in order to get it to show, I have to power down the external (which is and appears to be running) and then power it back up, and if that doesn't work, usually reseating the USB works.
Then again... My problems started happening after I installed CandyBar and applied some folder changes. I have since dumped it.
whatever problems you have with that external they have absolutely nothing to do with Candy bar. all candy bar does is change a few icon files on your main hard drive. that can have no effect on mountability of anything.
This sounds to me like a hardware problem with your external. the drive could be failing. the USB bus could be failing either on the drive or on the computer. One thing you could do is check to see if there are any firmware upgrades for that drive. Look at the manufacturer's website. also try testing the drive with another computer if you can.
On another note... Anyone use CandyBar and NOT have any problems or really like it? Maybe it was just a coincidence.
yes, I use it and REALLY like it. no problems whatsoever.

Constantly having to repair disk permissions after hanging system

From the time I purchased this I've had ongoing issues with the java, flash, OS updates causing the computer to hang forever. Sometimes I end up having to press the off button because Command Q and Command/Option/Escape won't allow a force quit even after a 20 minute wait. I don't know enough about what's going on behind the boot up to know what's wrong. Here is a copy of my console log and this is exactly what they look like each time after I have gone in and done a disk verify, (says it's okay) and then repair disk permissions. I've had to boot to safe mode 3 times today and repair permissions due to this issue. There is nothing plugged into the computer except the power cord. The OS is up to date per Software Update and the only 3rd party software installed is SKYPE ...
1/25/11 5:45:58 PM SoftwareUpdateCheck[520] Checking for updates
1/25/11 5:45:58 PM storeagent[524] port created
1/25/11 5:46:27 PM com.apple.launchd[1] (com.apple.suhelperd[522]) Exited with exit code: 2
1/25/11 5:46:27 PM com.apple.launchd.peruser.501[88] ([0x0-0x3d03d].SoftwareUpdateCheck[520]) Exited with exit code: 102
1/25/11 8:21:42 PM [0x0-0x52052].com.skype.skype[613] Main starting with pid 613 parent pid 88
1/25/11 8:21:43 PM Skype[613] SkypeApplication::init called
1/25/11 10:56:56 PM com.apple.launchd[1] * launchd[1] has started up. *
1/25/11 11:09:29 PM com.apple.fontd[70] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:09:31 PM com.apple.WindowServer[72] Tue Jan 25 23:09:31 Troy-Lindstroms-MacBook.local WindowServer[72] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/25/11 11:09:32 PM com.apple.fontd[70] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:09:40 PM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/25/11 11:09:40 PM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/25/11 11:09:40 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/25/11 11:09:42 PM fontd[100] Database content version mismatch (stored(15) != expected(14))
1/25/11 11:09:47 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
1/25/11 11:10:09 PM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/25/11 11:10:12 PM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/25/11 11:10:13 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[110]) Exited: Killed
1/25/11 11:10:14 PM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
1/25/11 11:10:33 PM com.apple.launchd[1] * launchd[1] has started up. *
1/25/11 11:11:24 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/25/11 11:11:24 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/25/11 11:11:24 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/25/11 11:11:28 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/25/11 11:11:28 PM fontd[101] Failed to open read-only database, regenerating DB
1/25/11 11:11:34 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/25/11 11:11:40 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:11:48 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:11:49 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 90
1/25/11 11:11:51 PM Skype[116] SkypeApplication::init called
1/25/11 11:38:12 PM com.apple.WindowServer[69] Tue Jan 25 23:38:12 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/26/11 11:36:13 AM [0x0-0x6d06d].com.skype.skype[666] Main starting with pid 666 parent pid 90
1/26/11 11:36:14 AM Skype[666] SkypeApplication::init called
1/26/11 12:25:04 PM com.apple.launchd.peruser.501[90] ([0x0-0x6d06d].com.skype.skype[666]) Exited: Terminated
1/26/11 5:45:58 PM SoftwareUpdateCheck[867] Checking for updates
1/26/11 5:45:58 PM storeagent[870] port created
1/26/11 5:47:17 PM com.apple.launchd[1] (com.apple.suhelperd[869]) Exited with exit code: 2
1/26/11 5:47:17 PM com.apple.launchd.peruser.501[90] ([0x0-0x92092].SoftwareUpdateCheck[867]) Exited with exit code: 102
1/26/11 8:32:58 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:32:58 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 8:32:58 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:32:58 Troy-Lindstroms-MacBook.local Safari[143] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/26/11 8:33:10 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:33:10 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 8:33:24 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:33:24 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 10:48:32 PM com.apple.launchd.peruser.501[90] ([0x0-0x11011].com.apple.Safari[143]) Exited: Terminated
1/26/11 10:49:37 PM com.apple.launchd[1] (com.apple.suhelperd[1047]) Exited with exit code: 2
1/26/11 10:49:44 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/27/11 11:39:52 PM com.apple.launchd[1] * launchd[1] has started up. *
1/27/11 11:40:14 PM com.apple.launchd.peruser.501[84] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/27/11 11:40:15 PM com.apple.UserEventAgent-LoginWindow[77] ALF error: cannot find useragent 1102
1/27/11 11:40:15 PM com.apple.UserEventAgent-LoginWindow[77] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/27/11 11:40:15 PM SoftwareUpdateCheck[98] Checking for updates
1/27/11 11:40:15 PM com.apple.launchd.peruser.501[84] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/27/11 11:40:17 PM storeagent[119] port created
1/27/11 11:40:21 PM com.apple.WindowServer[65] Thu Jan 27 23:40:21 Troy-Lindstroms-MacBook.local WindowServer[65] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/27/11 11:40:27 PM [0x0-0xa00a].com.skype.skype[116] Main starting with pid 116 parent pid 84
1/27/11 11:40:29 PM Skype[116] SkypeApplication::init called
1/27/11 11:41:02 PM SoftwareUpdateCheck[98] Downloading "iTunes"
1/27/11 11:42:35 PM SoftwareUpdateCheck[98] Auto-download of "iTunes" SUCCESSFUL.
1/27/11 11:42:35 PM SoftwareUpdateCheck[98] Launching app
1/27/11 11:43:20 PM com.apple.launchd.peruser.501[84] ([0x0-0x6006].SoftwareUpdateCheck[98]) Exited with exit code: 102
1/28/11 9:51:59 AM com.apple.RemoteUI[589] CoreAnimation: rendering error 501
1/28/11 9:52:15 AM com.apple.RemoteUI[589] HTTP2 Streaming Reads ON
1/28/11 11:31:15 AM com.apple.launchd.peruser.501[84] ([0x0-0x10010].com.apple.Safari[134]) Exited: Terminated
1/28/11 11:42:21 AM com.apple.launchd[1] (com.apple.suhelperd[104]) Exited with exit code: 2
1/28/11 3:49:50 PM com.apple.launchd.peruser.501[84] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/28/11 3:49:50 PM com.apple.launchd.peruser.501[84] ([0x0-0x80080].com.apple.iTunesHelper[764]) Exited: Killed
1/28/11 3:50:10 PM com.apple.launchd.peruser.501[84] (com.apple.Dock.agent[88]) Exit timeout elapsed (20 seconds). Killing
1/28/11 3:53:36 PM com.apple.launchd[1] * launchd[1] has started up. *
1/28/11 3:55:16 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/28/11 3:55:16 PM com.apple.UserEventAgent-LoginWindow[82] ALF error: cannot find useragent 1102
1/28/11 3:55:16 PM com.apple.UserEventAgent-LoginWindow[82] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/28/11 3:55:25 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/28/11 3:55:27 PM com.apple.WindowServer[72] Fri Jan 28 15:55:27 Troy-Lindstroms-MacBook.local WindowServer[72] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/28/11 3:55:40 PM [0x0-0x8008].com.skype.skype[115] Main starting with pid 115 parent pid 90
1/28/11 3:55:41 PM Skype[115] SkypeApplication::init called
1/28/11 11:40:16 PM SoftwareUpdateCheck[419] Checking for updates
1/28/11 11:40:16 PM storeagent[422] port created
1/28/11 11:40:59 PM com.apple.launchd[1] (com.apple.suhelperd[421]) Exited with exit code: 2
1/28/11 11:40:59 PM com.apple.launchd.peruser.501[90] ([0x0-0x56056].SoftwareUpdateCheck[419]) Exited with exit code: 102
1/29/11 3:02:24 AM quicklookd[551] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/images-30.jpeg>' (Start date: 2011-01-29 03:02:04 -0800)
1/29/11 3:05:11 AM quicklookd[555] [QL] 'Creating thumbnail - cancelled' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/About Downloads.pdf>' (Start date: 2011-01-29 03:03:35 -0800)
1/29/11 3:05:52 AM quicklookd[560] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/About Downloads.pdf>' (Start date: 2011-01-29 03:05:32 -0800)
1/29/11 3:06:44 AM quicklookd[563] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/images-3.jpeg>' (Start date: 2011-01-29 03:06:22 -0800)
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] ([0x0-0x86086].com.apple.Preview[708]) Exited: Killed
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] ([0x0-0x8a08a].com.apple.systemevents[721]) Exited: Killed
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/29/11 6:37:13 AM com.apple.launchd[1] * launchd[1] has started up. *
1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/29/11 6:37:42 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/29/11 6:37:50 AM com.apple.WindowServer[54] Sat Jan 29 06:37:50 Troy-Lindstroms-MacBook.local WindowServer[54] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/29/11 6:37:52 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/29/11 6:38:03 AM [0x0-0x8008].com.skype.skype[113] Main starting with pid 113 parent pid 89
1/29/11 6:38:05 AM Skype[113] SkypeApplication::init called
1/29/11 12:14:57 PM [0x0-0x36036].com.apple.CharacterPaletteIM[330] objc[330]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
1/29/11 12:43:40 PM [0x0-0x39039].com.apple.CharacterPaletteIM[346] objc[346]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
1/29/11 6:52:46 PM com.apple.launchd.peruser.501[89] ([0x0-0xf00f].com.apple.Safari[131]) Exited: Terminated
1/29/11 6:52:59 PM com.apple.launchd.peruser.501[89] ([0x0-0x1e01e].com.apple.AddressBook[206]) Exited: Terminated
1/29/11 6:52:59 PM loginwindow[29] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
1/29/11 6:52:59 PM com.apple.loginwindow[29] 2011-01-29 18:52:59.446 loginwindow[29:107] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
1/29/11 6:53:14 PM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 9:17:52 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 9:19:51 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:19:51 AM com.apple.WindowServer[68] Sun Jan 30 09:19:51 Troy-Lindstroms-MacBook.local WindowServer[68] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 9:19:54 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] ALF error: cannot find useragent 1102
1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 9:20:00 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 9:20:02 AM fontd[98] Database content version mismatch (stored(15) != expected(14))
1/30/11 9:20:04 AM SoftwareUpdateCheck[94] Checking for updates
1/30/11 9:20:05 AM storeagent[102] port created
1/30/11 9:20:08 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/30/11 9:20:38 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 9:20:39 AM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
1/30/11 9:20:44 AM com.apple.launchd[1] (com.apple.suhelperd[101]) Exited with exit code: 2
1/30/11 9:20:45 AM com.apple.launchd.peruser.501[86] ([0x0-0x6006].SoftwareUpdateCheck[94]) Exited with exit code: 102
1/30/11 9:20:49 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/30/11 9:20:55 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/30/11 9:21:16 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 9:22:04 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 9:22:07 AM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 9:22:07 AM fontd[101] Failed to open read-only database, regenerating DB
1/30/11 9:22:11 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:22:13 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/30/11 9:22:19 AM com.apple.WindowServer[69] Sun Jan 30 09:22:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 9:22:26 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:22:26 AM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
1/30/11 9:22:28 AM Skype[116] SkypeApplication::init called
1/30/11 10:33:53 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/30/11 10:34:02 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 10:34:26 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 10:34:28 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[107]) Exited with exit code: 1
1/30/11 10:34:32 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
1/30/11 10:34:36 AM Skype[112] SkypeApplication::init called
1/30/11 3:37:45 PM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 3:50:19 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 3:50:19 PM com.apple.WindowServer[69] Sun Jan 30 15:50:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 3:50:21 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 3:50:52 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] ALF error: cannot find useragent 1102
1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 3:53:14 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 3:53:15 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 3:53:18 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
1/30/11 3:53:20 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/30/11 4:00:53 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 4:12:07 PM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 4:12:56 PM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 4:12:59 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 4:12:59 PM fontd[101] Failed to open read-only database, regenerating DB
1/30/11 4:13:06 PM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/30/11 4:13:15 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 4:13:21 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 4:13:21 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
1/30/11 4:13:23 PM Skype[116] SkypeApplication::init called
1/30/11 5:12:33 PM com.apple.WindowServer[69] Sun Jan 30 17:12:33 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 5:12:34 PM com.apple.RemoteUI[169] CoreAnimation: rendering error 501
1/30/11 5:12:46 PM com.apple.launchd.peruser.501[89] ([0x0-0x9009].com.skype.skype[116]) Exited: Terminated
1/30/11 5:12:49 PM com.apple.RemoteUI[169] HTTP2 Streaming Reads ON
1/30/11 5:13:12 PM System Preferences[175] .scriptSuite warning for result type of command 'timedLoad' in suite 'SystemPreferences': the type NSNumber ('long') doesn't match the result Apple event code ('doub').
1/31/11 12:17:59 AM com.apple.launchd[1] (com.apple.aslmanager) Throttling respawn: Will start in 5 seconds
1/31/11 12:54:05 AM com.apple.launchd.peruser.501[89] ([0x0-0x18018].com.apple.Safari[180]) Exited: Terminated
1/31/11 1:31:00 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/31/11 1:31:24 AM com.apple.launchd[1] * launchd[1] has started up. *
1/31/11 1:33:28 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:33:29 AM com.apple.WindowServer[67] Mon Jan 31 01:33:29 Troy-Lindstroms-MacBook.local WindowServer[67] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/31/11 1:33:31 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] ALF error: cannot find useragent 1102
1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/31/11 1:33:48 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/31/11 1:33:50 AM fontd[96] Database content version mismatch (stored(15) != expected(14))
1/31/11 1:33:54 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[105]) Exited with exit code: 1
1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/31/11 1:44:00 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[107]) Exited: Killed
1/31/11 1:44:10 AM com.apple.launchd[1] * launchd[1] has started up. *
1/31/11 1:44:43 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/31/11 1:44:43 AM fontd[95] Database content version mismatch (stored(15) != expected(14))
1/31/11 1:44:43 AM fontd[95] Failed to open read-only database, regenerating DB
1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/31/11 1:44:45 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
1/31/11 1:44:45 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:44:57 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:44:58 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
1/31/11 1:45:00 AM Skype[112] SkypeApplication::init called
1/31/11 2:00:28 AM com.apple.launchd[1] (com.apple.suhelperd[141]) Exited with exit code: 2
Can anyone see the issue or tell me what I need to do to fix this thing???

Which MacBook model? Did it come with OSX 10.6 or did you upgrade it?

Repair Disk Permissions Issues

I'm not sure I am posting this in the correct community but here goes . . .
I have a 17" Macbook Pro running the latest version of Snow Leopard. It is almost 2 years old and I have 4 gb RAM.
Recently, it seems to be slowing down and I have to run repair disk permissions 2-3 times a week to recoup a little speed. I also delete my Firefox cache regularly to try to gain a little there. I do make a few videos in iMovie and initially I thought that was the problem but this week I have not really worked in iMovie much and it is still slow. There seems to be some issues in the log of the repair permissions. I hope they show in this image. I don't know what these mean or how to fix them. It is the "permissions differ" entries I am confused about.

You can ignore those permissions per support article
http://support.apple.com/kb/TA21090
Since you brought up iMove, I suspect your storage is nearly full as this most certainly causes the computer to slow down. video files are the biggest culprit.
Look in your Activity Monitor and reduce the drive space by copying to a external, Disk Utility HFS+ formatted external powered drive of unnecessary files so your boot drive is ideally below 50% filled (yea I know but the computer slows down after that) and not more than 75% filled.
Once you have done that. Get another newer external powered HFS drive and download the free Carbon Copy Cloner and clone the internal drive to the external.
Hold option and boot off the external clone, test it out then use Disk Utility to erase the internal and then reverse clone the external onto the internal, this will defragment and optimize your drive so the OS and programs are on the fast part of the drive, not the slow parts.
Reboot into the internal and run off of the free OnyX's maintainence and cleaning aspects and reboot.
http://www.titanium.free.fr/
Sir speedy machine here we come!
Now of course you may have other issues that could be causing your slow down, like not enough RAM or some sort of failed process or leftover program, tweaks or simply a slow Internet.
You can opt to simply reinstall OS X 10.6 ( by holding c and booting off the installer disk ) over your installed version (doesn't touch files or programs) then immediatly Software Updating until clear, that will clean anything hanging out in OS X.
If you still have slowdowns, then it's in what geeks call "User land" basically something installed outside of root, like a program or only runs in user, not in OS X.
For that you need to create a new user, transfer your files via the Shared Drop and wean yourself off the old user and finally delete it. Also install all new versions of your third party programs removing the originals first.
That should do it.

Need advice on Repairing Disk Permissions...

I need some input from those who know how to Repair Disk Permissions (under Disk Utility, for those who don't know).
Basically, I lost a TON of my Access and Privileges on my G4 recently--which I really only noticed after iTunes would no longer let me import anything (no matter how many times I tried changing the Ownership & Permissions on my Music folder's Info section)--which, I might add, I suffered due to a virus caused by Limewire. As had been suggested to me, I Verified Disk Permissions, and saw that I had a TON of problems listed on my startup HD. So I'm now seeking ways to repair them.
Now, the most obvious way is using the Repair Disk Permissions program (which I've actually never had to use before). However, under OS10.3.9, when I select the Repair Disk Permissions on Disk Utility, in listing all my Drives available, it actually shows the drive in 2 formats/pictures:
1) the actual technical name/manufactor model/GB size of the drive (on top), and
2) the Desktop name and Icon picture of the Drive as it appears on my desktop.
This confuses me: as you can guess, the startup Drive in question is only partioned as one. So on Disk Utility, which of these 2 pictured drives do I have to highlight and Repair Disk Permissions to (i.e. 19GB Maxtor32049 Vs. 'HAL')?
Also, for those of you who have used other means (programs) to change Disk Permissions, which would you recommend? For example, I got a program from Versiontracker called BatCHmod, but I don't know if something like it is any safer than just using Repair Disk Permissions. Because unfortunately, I'm running out of room on my disk, and don't have nearly enough space on my other drive to hope to back the whole Drive up to.
Please help!!!

Hi phasmatrope!
TO REPAIR PERMISSIONS ON THE STARTUP DISK
1.Open Disk Utility, located in Applications/Utilities, and select the startup disk HAL, in the left column.
2.Click First Aid.
3.Click Verify Disk Permissions to test permissions or Repair Disk Permissions to test and repair permissions. (I never "Verify". Just run "Repair".)
Rerun RP until the only message it reports is:
"We are using special permissions for the file or directory ./System/Library/Filesystems/cd9660.fs/cd9660.util.
New permissions are 33261"
This is a status message and not a cause for concern. You may safely ignore it.
Or these:
"We are using a special uid for the file or directory ./private/var/at/jobs. New uid is 1"
"We are using a special uid for the file or directory ./private/var/at/spool. New uid is 1"
Again, these are status messages, which appeared after Security Update 2005-001.
There may be others that you can ignore. Complete lists at link below.
Spurious Permissions Errors In 10.3.x
When "Repair Permissions" is complete. Quit "Disk Utility".
Good Luck!
ali b

When I repair disk permissions I get the following:Repairing permissions for "MacIntosh HD" Determining correct file permissions. Permissions differ on ./Library/Widgets, should be drwxr-xr-x , they are drwxrwxr-x Owner and group corrected on ./Library/W

Repairing permissions for “MacIntosh HD”
Determining correct file permissions.
Permissions differ on ./Library/Widgets, should be drwxr-xr-x , they are drwxrwxr-x
Owner and group corrected on ./Library/Widgets
Permissions corrected on ./Library/Widgets
Permissions differ on ./System/Library/User Template, should be drwx------ , they are drwxr-xr-x
Owner and group corrected on ./System/Library/User Template
Permissions corrected on ./System/Library/User Template
Group differs on ./usr/bin/fetchmail, should be 0, group is 6
Permissions differ on ./usr/bin/fetchmail, should be -rwxr-xr-x , they are -rwxr-sr-x
Owner and group corrected on ./usr/bin/fetchmail
Permissions corrected on ./usr/bin/fetchmail
Permissions differ on ./usr/lib/php/build/Makefile.global, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/Makefile.global
Permissions corrected on ./usr/lib/php/build/Makefile.global
Permissions differ on ./usr/lib/php/build/acinclude.m4, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/acinclude.m4
Permissions corrected on ./usr/lib/php/build/acinclude.m4
Permissions differ on ./usr/lib/php/build/mkdep.awk, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/mkdep.awk
Permissions corrected on ./usr/lib/php/build/mkdep.awk
Permissions differ on ./usr/lib/php/build/phpize.m4, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/phpize.m4
Permissions corrected on ./usr/lib/php/build/phpize.m4
Permissions differ on ./usr/lib/php/build/scan_makefile_in.awk, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/scan_makefile_in.awk
Permissions corrected on ./usr/lib/php/build/scan_makefile_in.awk
Permissions differ on ./usr/lib/system/libmathCommon.A.dylib, should be -r-xr-xr-x , they are -rwxr-xr-x
Owner and group corrected on ./usr/lib/system/libmathCommon.A.dylib
Permissions corrected on ./usr/lib/system/libmathCommon.A.dylib
Permissions differ on ./usr/libexec/dumpemacs, should be -r-sr-xr-x , they are -r-xr-xr-x
Owner and group corrected on ./usr/libexec/dumpemacs
Permissions corrected on ./usr/libexec/dumpemacs
Permissions repair complete
The privileges have been verified or repaired on the selected volume
Then I sometimes get the brown screen that states,You must re-start your computer.
I have already zeroed out the hard drive and re-installed Panther and the upgrade Tiger disc.
I repair permissions using the Tiger disc upgrade.
Can anyone help me with this??

> I repair permissions using the Tiger disc upgrade.
One thing to note... When running Repair Disk Permissions, it is best to run it while started up normally, from your normal startup disk, not from a Mac OS X installation disc. The only time you should run it while started up from an installation disc is if some problem is preventing you from starting up normally. OTOH, Repair Disk can only be used when starting up from a different disk (such as an installation disc).
So, I would start up normally, run Disk Utility, and use Repair Disk Permissions on your normal startup disk.
NOTE: Repair Disk Permissions often gives alerts messages that can be ignored. They are more "informational," not serious errors.
http://support.apple.com/kb/TS1448
You should still run it periodically. When you run it, what needs to be repaired has been repaired; consider the rest of it an FYI. I've never experience a problem, where a Repair Disk Permissions message actually caused a problem. But, if you ever get an error while running Repair Disk (or Verify Disk), that is usually a serious problem.

Repairing disk permissions keeps giving same message

I routinely verify my HD and repair disk permissions. The latter often indicates repairs are needed, especially after installation of new software or updates (I repair before and after). But once repaired, if I verify the permissions they come out ok -- i.e., no repairs are needed. Until just recently. I am now getting the following message after repairing permissions:
Verify permissions for “Macintosh HD”
Determining correct file permissions.
Permissions differ on ./private/var/log/secure.log, should be -rw------- , they are -rw-r-----
Permissions verification complete
The privileges have been verified or repaired on the selected volume
If I verify permissions after repairing this, I get the same message again. So the repair is not holding. I am running OS X 10.4.11 and I recall that on earlier OS's there were sometimes innocuous repairs that kept being required, but that were not really a problem. But under 10.4.11 a repair has usually been good, and clears the deck. Until now. Any ideas?
Update: I am no longer having this problem. Possibly I was clicking on the verify permissions button instead of the repair button. I have used DU many times, so this would be a fairly boneheaded thing to do at this point. Maybe familiarity breeds carelessness? In any event, I often get the message above when I check disk permissions, and I would be curious to know why it is one of the more common repairs needed. So let's make that my question instead...
TIA
Message was edited by: Drake Bradley

Not to worry about it, that secure.log is a common one for that.
Repair Permissions checks Library>Receipts to find out the proper Permissions, that file's Permissions may exist in more than one and/or some OS component doesn't know the new/latest permissions when using it.

Repair Disk Permissions is Grayed Out

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