Repair Permissions Error (Close to Runs too long, No Progress Bar)

I have gotten this Repair Permissions error at least 10 times:
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
One Internal Hard Drive, Erase, Install from scratch using Retail 10.5 DVD.
Quad 266.
It is similar to Repair Permissions takes forever with no progress bar, I get the Barber Pole for about 10 minutes and then it finishes with the above error. It seems like it is hanging trying to deal with the problem file and can't repair it.

I ran REPAIR PERMISSIONS again after installing Acrobat updaters.
At first I quit because it appeared to be hung.
I re ran it and came back later to this:
Repairing permissions for “105_HD”
Stopped by user
Permissions repair complete
Repairing permissions for “105_HD”
Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Reso urces/Locum" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Install.framework/Versions/A/Resources/runner " has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/readconf ig" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/writecon fig" has been modified and will not be repaired.
Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Permissions repair complete

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Well, I tried all of that and I'm still getting the error message. I've also repaired disk permissions and run Disk Warrior. When I repaired disk permissions, many HP printer items showed up in the list.

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+-----------------------------
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last lines of FNDCPGSC29793.tx
)]:BEGIN :[SVC-GSM-WFALSNRSVC-262965 : oracle.apps.fnd.cp.gsc.Processor.sleep()]:Waiting 10 seconds (10000 ms)
[ 1:STATEMENT:[SVC-GSM-WFALSNRSVC-262965 : oracle.apps.fnd.cp.gsc.Processor.run()]:Running loop from the top.
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-1:PROCEDURE:[SVC-GSM-WFALSNRSVC-262965 : oracle.apps.fnd.cp.gsm.GSMQueueProcessor.process()]:BEGIN
:-1:PROCEDURE:[SVC-GSM-WFALSNRSVC-262965 : oracle.apps.fnd.cp.gsm.GSMQueueProcessor.read()]:BEGIN
:-1:STATEMENT:[SVC-GSM-WFALSNRSVC-262965 : oracle.apps.fnd.cp.gsc.Processor.run()]:Running loop from the top.
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[Apr 29, 2011 1:19:51 1:-1:PROCEDURE:[SVC-GSM-WFALSNRSVC-262965 : oracle.apps.fnd.cp.gsc.Processor.sleep()]:BEGIN :1304097591452:Thread[ComponentMonitor,5,main]:0:-1:
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Edited by: user9231603 on Apr 29, 2011 10:25 AM

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Hello,
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Thanks & Best Regards,
Amol Thite
I think, I cant Attach the file here and character limit is 30K for the post here so putting below the few lines of Log File content:
I can email the screen shots docs and complete log file on request if needed.
It stuck in Configuration Assistance screen -
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=====start few lines of Log File=======================================
The file oraparam.ini could not be found at /u01/app/oracle/product/11.1.0/db_1/oui/bin/oraparam.ini
Using paramFile: /u01/app/oracle/product/11.1.0/db_1/oui/oraparam.ini
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=====end few lines of Log File==================================
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OCDMCfgPlugIn: Receiving SYSTEM password...
OCDMCfgPlugIn: Passing SYSTEM credentials to configuration script...
OCDMCfgPlugIn: SYSTEM credentials passed to configuration script.
OCDMCfgPlugIn: SYSTEM password received.
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OCDMCfgPlugIn: ocdm log folder exist
OCDMCfgPlugIn: Exporting config env...
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OCDMCfgPlugIn: Installing OWB...
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OCDMCfgPlugIn: 2011_02_28_11_24_30 10 % complete
OCDMCfgPlugIn: Importing OCDM sample schema
==================end of log File ========================================

Hi Please check my answers
1) How to login to Analytics after OBIEE 11gR2 installed on Linux - ( in our case we use user as Administrator and tried password same as username, even checked with the user weblogic and other but no success. Please provide us the information which give details(document) about the Administartion of OBIEE 11gR2 on Linux).
The current OCDM version does not support BIEE 11g, so you need to install BIEE 10g. In next release(will be available soon), OCDM will support BIEE 11g.
2) The issue with installation of OCDM Sampple Reports though successful installation of OCDM Data Model.(First Installation Type from OCDM Installer)
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Edited by: vengaladasu on Nov 3, 2008 2:56 PM

Hi Venga,
maybe the note 1115597 could help as well. Depending on your release there are BBP_GET_STATUS_2 notes also notes for the backend system:
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Hi All,
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I the following procedure:
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See:
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I think I may have deleted something important!
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In disk utility, I can no longer repair disk permissions. When I try, I get a box saying;
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Glad that sorted your immediate problem.
On the face of it I would have thought that none were necessary, as the name of the folder and the fact that they're installer packages for things that have already been installed would seem to indicate that they are not needed. BUT the fact that the loss of one of those files caused a problem with something that can be as important as the ability to repair permissions is pretty clear evidence that the files in there are used for something!
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Warning: SUID file "usr/bin/lppasswd" has been modified and will not be repaired.
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Just ignore those error messages. They mean nothing. People are always asking about them. I have no idea why Apple put them there.
You want smilies?
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First "Try Disk Utility
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http://docs.info.apple.com/article.html?artnum=106214
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http://docs.info.apple.com/article.html?artnum=25751
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