Repaired Disk permissions-Got Warning message !

My 21.5 3.06 iMac seemed to be having trouble loading some web pages. So along with the usual cleaning out cookies, clearing history, re-setting Safari, I also did a disk permissions verify/repair, and got this message in the list of bad permissions-
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Is this anything I need to be worried about ? Never saw this one before.
thanks

HI,
You don't need to be concerned about SUID messages, read here.
Mac OS X: Disk Utility's Repair Disk Permissions messages that you can safely ignore
Carolyn

Similar Messages

Why can't I verify or repair disk permissions?

In recent weeks, when I have tried to verify or repair disk permissions, I get messages that say (whatever file) has been altered and will not be repaired.

bubbapao wrote:
I just wondered why I could suddenly no longer verify or repair anything.
That is not what you said in an earlier post. you said you got some errors that certain files could not be repaired. That is Not the same as I Can't Repair Anything. Certain files not having the permissions repaired is Normal. It happens on every Mac.

When repairing disk permissions today I got a new warning message . . .

Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Anyone know what the ramifications of this is? What needs fixing and how?

When you run +Repair Disk Permissions+, it is fixing permissions as needed. The other messages are almost always just information - no action needed.
http://support.apple.com/kb/TS1448

Warning Message after repairing disk permissions

I received the following warning after running Repair Disk Permissions:
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
My computer has been crashing a lot. Apple ran hardware tests and everything appears to be running OK. Could this message hold the key to my problems?

Probably not, please read this Apple Advice Letter:
http://support.apple.com/kb/TS1448
However it would be very beneficial if you provide more information about the circumstances and specifications of your iMac to determine why it's crashing. Also if you are running Activity Monitor to check and see how much FREEE RAM you have and if there are any processes taking up a lot of % CPU.
Roger

What does the message "Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired" when repairing disk permissions?

What does the message "Warning: SUID file “System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent” has been modified and will not be repaired" when repairing disk permissions?

It's just a status message, albeit a misleading one, and can be ignored.
http://support.apple.com/kb/TS1448
Regards.

I ran a repair disk permissions and got the following:

I ran a repair disk permissions on my mack book and i got the following message: Warning: SUID file “System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent” has been modified and will not be repaired. What are the implications?

These are innocuous messages, not errors. The will be recurring but are harmless and will not affect your computer. They can be ignored.

Warning checking/repairing disk permissions

While checking and attempting to repair disk permissions using Apple's Disk Utility, the following message appeared:
Warning:SUIDfile"System/Library/CoreServices/RemoteManagement/ARDAgent.app/Conte nts/MacOS/ARDAgent" has been modified and will not be repaired.
I am running OS X 10.5.1 - how can this be corrected? Should I reload the system software?

Don't worry about it--it's a known issue:
http://docs.info.apple.com/article.html?artnum=306925

Repairing disk permissions keeps giving same message

I routinely verify my HD and repair disk permissions. The latter often indicates repairs are needed, especially after installation of new software or updates (I repair before and after). But once repaired, if I verify the permissions they come out ok -- i.e., no repairs are needed. Until just recently. I am now getting the following message after repairing permissions:
Verify permissions for “Macintosh HD”
Determining correct file permissions.
Permissions differ on ./private/var/log/secure.log, should be -rw------- , they are -rw-r-----
Permissions verification complete
The privileges have been verified or repaired on the selected volume
If I verify permissions after repairing this, I get the same message again. So the repair is not holding. I am running OS X 10.4.11 and I recall that on earlier OS's there were sometimes innocuous repairs that kept being required, but that were not really a problem. But under 10.4.11 a repair has usually been good, and clears the deck. Until now. Any ideas?
Update: I am no longer having this problem. Possibly I was clicking on the verify permissions button instead of the repair button. I have used DU many times, so this would be a fairly boneheaded thing to do at this point. Maybe familiarity breeds carelessness? In any event, I often get the message above when I check disk permissions, and I would be curious to know why it is one of the more common repairs needed. So let's make that my question instead...
TIA
Message was edited by: Drake Bradley

Not to worry about it, that secure.log is a common one for that.
Repair Permissions checks Library>Receipts to find out the proper Permissions, that file's Permissions may exist in more than one and/or some OS component doesn't know the new/latest permissions when using it.

Repair disk permissions message

After running Repair disk permissions, it read:
Group differs on "private/etc/cups", should be 0, group is 26.
Anyone know what this means? Do I have a problem? I just bought this macbook today and so far, I love it. However, this message concerns me. Everytime I run permissions on my imac, I never get any kind of messages. Thanks.

Hello All,
My name is Harris and i am an Apple Store Genius.
This is a normal message and it is to be ignored. It will be completely fixed by 10.5.7. If it is not already fixed for some users.
Hope this helps,
~ Harris

Repair Disk Permissions utility stalled - I have read the knowledge base

I have researched the knowledge base and search for posts on this and cannot find answer: Running 10.4 at the latest version. used the original install 1 disc I received with Tiger to repair disc permissions (like Apple support has told me to do in the past, but my current research said I do not need to do this unless certain parameters are met, and none of the parameters applied, but oh well, I am here anyway). Cold Boot from the original install disc 1 and slected the start up disk I use (I only have one start up disc/drive). Did a repair disc permissions and got a long running routine that reporting a lot of fixes, then the utility has stalled -- no progress on the progress bar. I "stopped" the process using the "stop repair" button (three times). The log reflected the utility stopped, but the progress bar still is blue and not moving (for a couple of hours). When I go to quity File >Disk Utility, it warns me that Disk Utility is running and this may make my system unstable/unsuable.
QUESTION: CAN I JUST QUIT DISK UTILITY AND NOT HAVE ANY ADVERSE AFFECT ON MY IMAC DRIVE?

Thanks for your advice, I still have an issue:
-after the first repair disk permission "stalled" process, I exited Disk Utility and cold booted the machine after I had disconnected all external devices other than the original iMac keyboard
-obtained the combo patch for 10.4.7 from the Apple download site (it had already been installed but I reinstalled per your advice)
-re-applied the combo patch and then did another cold boot
-ran Disk Utility from the original Tiger install #1 disk, and then selected "repair disk permissions" for my start up disk (I only have one)
- process ran for 10 minutes or so then gave the following error message: "Disk Utility Error: Disk Utility has lost its connection with disk utility management tool and cannot continue. Please quit disk utility and re-launch disk utility"
- I pushed the "stop disk permission repair" button, then quit disk utility, then cold booted the machine again.
-re-applied combo patch as above, then cold booted the machine
-ran disk utility from the original iMac install #1 disk, ran "repair disk permissions", and then received the same error message as above.
- I then just quit Disk Utility and cold booted the machine again and went about my business. There does not seem to be any problem with the machine (was not before, but I ran repair permissions thinkging this was a routine maintenance taks that should be run)
- in my prior search of the knowledge base, I found the following information about repair disk permissions:
Location: http://discussions.apple.com/thread.jspa?messageID=607495&#607495
How often should I Repair Permissions?
You do not need to Repair Permissions on a regular basis.
There are only three occasions you need to do this:
1. When you have just installed something that required you to run an Installer, rather than just copying some software to a folder. This should be done for both Apple and non-Apple software.
2. When you have been working on your OS X files or folders while booted from OS 9, or remotely connected via a non-OS X machine, since OS 9 and other systems do not handle OS X's permissions correctly.
3. The other case is if your system is behaving strangely, when you should run Disk Repair from your CD followed by Repair Permissions. This is just to eliminate these things before going on to further trouble-shooting.
Otherwise you can happily forget about Permissions!"
So, it would appear I do not need to do anything else; the machine seems to be working properly. Is there anything else I need to do? thanks for the help! Bob

Errors during Repair Disk Permissions

I get the following error messages when trying to repair disk permissions in Leopard (see below).
Does anyone know why this is happening and what I can do to fix it?
Repairing permissions for “OS X Root”
Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Reso urces/Locum" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Install.framework/Versions/A/Resources/runner " has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/readconf ig" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/writecon fig" has been modified and will not be repaired.
Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.

These are my error messages
Permissions differ on "System/Library/PrivateFrameworks/GraphicsAppSupport.framework/Versions/A/Frame works/QuartzComposer.framework", should be lrwxr-xr-x , they are drwxr-xr-x .
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
From what I read here, I can ignore the SUID message. What about that first one though. It was not changed (I did a 2nd disk repair after I saw it and got it again). Ignorable, she says hopefully??
Bea

Repair Disk Permissions with Lion

Installed Lion two days ago and thought I would "Verify/Repair Disk Permissions" for the first time with Lion. But I'm getting the warning message:
Warning: SUID file “System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent” has been modified and will not be repaired.
I tried "Repair" twice and got the exact same message both times. I'm not sure if this is serious or not, and can't say for certain if it wouldn't have happened a week ago or few weeks ago (it's been nearly two months since last "Verfiy/Repair"). Any lessons, tips, instructions will be appreciated.

Installed Lion on my 27" iMac (mid 2010) and everyday since it shuts down after start up.
Called Apple they said repair permissions, after safe boot. Thats works but only for the next restart.
When I shutdown and start up the next day I have to go thru the same process.
Anybody else have this problem?

Failing to repair disk permissions

Hello, it's impossible to repair disk permissions on my MacBook. I've tried to do it by Leopard's own Disk Utility right from instalation DVD, but it didn't help. Here's the log that I've got:
+Verifying volume “vic's MacBook”+
+Performing live verification.+
+Checking Journaled HFS Plus volume.+
+Checking Extents Overflow file.+
+Checking Catalog file.+
+Checking multi-linked files.+
+Checking Catalog hierarchy.+
+Checking Extended Attributes file.+
+Checking volume bitmap.+
+Checking volume information.+
+The volume vic's MacBook appears to be OK.+
+Verify permissions for “vic's MacBook”+
+Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Reso urces/Locum" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/PrivateFrameworks/Install.framework/Versions/A/Resources/runner " has been modified and will not be repaired.+
+Permissions differ on "private/var/log/secure.log", should be -rw------- , they are -rw-r----- .+
+Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/readconf ig" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/writecon fig" has been modified and will not be repaired.+
+Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.+
+User differs on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/English.lproj/Localized.rsrc", should be 0, user is 501.+
+Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/English.lproj/Localized.rsrc", should be -rw-rw-r-- , they are -rw-r--r-- .+
+User differs on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/English.lproj", should be 0, user is 501.+
+Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/English.lproj", should be drwxrwxr-x , they are drwxr-xr-x .+
+User differs on "Library/Internet Plug-Ins/flashplayer.xpt", should be 0, user is 501.+
+Permissions differ on "Library/Internet Plug-Ins/flashplayer.xpt", should be -rw-rw-r-- , they are -rw-r--r-- .+
+Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.+
+User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/jvm.cfg", should be 0, user is 95.+
+User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/classlist" , should be 0, user is 95.+
+Permissions verification complete+
+Repairing permissions for “vic's MacBook”+
+Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Reso urces/Locum" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/PrivateFrameworks/Install.framework/Versions/A/Resources/runner " has been modified and will not be repaired.+
+Permissions differ on "private/var/log/secure.log", should be -rw------- , they are -rw-r----- .+
+Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/readconf ig" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/writecon fig" has been modified and will not be repaired.+
+Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.+
+Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.+
+User differs on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/English.lproj/Localized.rsrc", should be 0, user is 501.+
+Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/English.lproj/Localized.rsrc", should be -rw-rw-r-- , they are -rw-r--r-- .+
+User differs on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/English.lproj", should be 0, user is 501.+
+Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/English.lproj", should be drwxrwxr-x , they are drwxr-xr-x .+
+User differs on "Library/Internet Plug-Ins/flashplayer.xpt", should be 0, user is 501.+
+Permissions differ on "Library/Internet Plug-Ins/flashplayer.xpt", should be -rw-rw-r-- , they are -rw-r--r-- .+
+Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.+
+User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/jvm.cfg", should be 0, user is 95.+
+User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/classlist" , should be 0, user is 95.+
+Permissions repair complete+

Those are merely notifications. You can ignore them. If you upgrade to 10.5.1 using the full downloadable updater from Apple, these messages should stop appearing. See the following:
http://docs.info.apple.com/article.html?artnum=306925

Need advice on Repairing Disk Permissions...

I need some input from those who know how to Repair Disk Permissions (under Disk Utility, for those who don't know).
Basically, I lost a TON of my Access and Privileges on my G4 recently--which I really only noticed after iTunes would no longer let me import anything (no matter how many times I tried changing the Ownership & Permissions on my Music folder's Info section)--which, I might add, I suffered due to a virus caused by Limewire. As had been suggested to me, I Verified Disk Permissions, and saw that I had a TON of problems listed on my startup HD. So I'm now seeking ways to repair them.
Now, the most obvious way is using the Repair Disk Permissions program (which I've actually never had to use before). However, under OS10.3.9, when I select the Repair Disk Permissions on Disk Utility, in listing all my Drives available, it actually shows the drive in 2 formats/pictures:
1) the actual technical name/manufactor model/GB size of the drive (on top), and
2) the Desktop name and Icon picture of the Drive as it appears on my desktop.
This confuses me: as you can guess, the startup Drive in question is only partioned as one. So on Disk Utility, which of these 2 pictured drives do I have to highlight and Repair Disk Permissions to (i.e. 19GB Maxtor32049 Vs. 'HAL')?
Also, for those of you who have used other means (programs) to change Disk Permissions, which would you recommend? For example, I got a program from Versiontracker called BatCHmod, but I don't know if something like it is any safer than just using Repair Disk Permissions. Because unfortunately, I'm running out of room on my disk, and don't have nearly enough space on my other drive to hope to back the whole Drive up to.
Please help!!!

Hi phasmatrope!
TO REPAIR PERMISSIONS ON THE STARTUP DISK
1.Open Disk Utility, located in Applications/Utilities, and select the startup disk HAL, in the left column.
2.Click First Aid.
3.Click Verify Disk Permissions to test permissions or Repair Disk Permissions to test and repair permissions. (I never "Verify". Just run "Repair".)
Rerun RP until the only message it reports is:
"We are using special permissions for the file or directory ./System/Library/Filesystems/cd9660.fs/cd9660.util.
New permissions are 33261"
This is a status message and not a cause for concern. You may safely ignore it.
Or these:
"We are using a special uid for the file or directory ./private/var/at/jobs. New uid is 1"
"We are using a special uid for the file or directory ./private/var/at/spool. New uid is 1"
Again, these are status messages, which appeared after Security Update 2005-001.
There may be others that you can ignore. Complete lists at link below.
Spurious Permissions Errors In 10.3.x
When "Repair Permissions" is complete. Quit "Disk Utility".
Good Luck!
ali b

Keep having to 'Repair Disk permissions'.

My MBP (2.53 GHZ Intel Core i5, running 10.6.8) keeps running slow, and only improves after Repairing Disk Permissions. I had to run this again this morning - and I'd only ran Permissions repair two days ago! This is what I got;
'Repairing permissions for “Macintosh HD”
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle", should be drwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib".
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Permissions repair complete'
The other day the list was probably 3 times this length, often ending with '...but they are 80'.
Any ideas?
Thanks

Have you run Repair Disk?
http://support.apple.com/kb/TS1417
Have you checked SMART status?
Check the S.M.A.R.T. status on your HD:Applications > Utilities > Disk Utility > in the panel at left, selectthe first item in the list/your HD mechanism>look at the bottom of the mainwindow next to S.M.A.R.T. status and see if it says “Verified” or somethingmore ominous like “Failing.”
Have you run background maintenance scripts?
http://docs.info.apple.com/article.html?artnum=107388
Have you checked in Activity Monitor to see if any processes are using a high ammount of CPU?
Sometimes a process can run amok and use more of the CPU than it should, potentially causing a slowdown and/or heat issues and/or other issues. To check on this, first use your Mac as you normally would, the longer the better (checking this right after starting up may not show you anything). After you’ve used your Mac for awhile (again, the longer the better), go to Applications > Utilities > open Activity Monitor > in the top menu at right, select All Processes in the drop downmenu > click on the column heading titled % CPU (this will update continuously, showing the percentage each process is using) > toward the bottom left of the window, click on CPU (this will show % Idle, which will also tell you how much of the CPU is being used).
Have you done an SMC Reset?
http://support.apple.com/kb/HT3964
And 4GB used, 2GB free btw...
By chance is it referring to RAM usage?

Repaired Disk permissions-Got Warning message !

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