Repairing Permissions and Got this Message????

Hi,
MacBook has been acting up lately. Just little things like stalling when opening aps and just plain iffy. Decided to repair permissions tonight and got these messages which looked unlike anything I'd seen in seven years of Mac ownership. Can anyone tell me if these are serious?
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/jvm.cfg", should be 0, user is 95.
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/classlist" , should be 0, user is 95.

I am on the edge of a breakdown with Leopard. I went through the headaches as listed in a bunch of other threads with Permissions corruption... after doing all of the suggested Terminal tweaks and still having my machine not work, I finally had enough, erased the hard drive and clean installed 10.5. Ran the permissions check in disc utility and all was good. Upgraded to 10.5.1, noticed my machine was sluggish... ran permissions check again and got...
Repairing permissions for “PowerbookHD”
Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Reso urces/Locum" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Install.framework/Versions/A/Resources/runner " has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/readconf ig" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/writecon fig" has been modified and will not be repaired.
Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.
My Powerbook G4 1.67GHz is running poorly now. I have not done anything except install 10.5, then update (manually downloading the installer and running it) to 10.5.1.
I also tried to get onto iChat, as soon as I selected the video button, iChat blew up, the computer froze completely... probably was a kernel crash.
Hullllppp?
jc, I know you said these SUID warnings have been around for a long time, I am another who has never seen them before.
The question is... WHY are they here now? They are telling us that something is wrong that can't be fixed with Disc Utility.
Any suggestions?
Thanks a bunch in Advance.
Matt

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