Require technical advice for designing XML database

Dear Fellows
I need your technical advice for the way storing the XML files into the database. We have experiments that produces more than 300 XML files. I want to store them in the database. There should be a mechanism (way) to store XML files related to one experiments. I can not change or update anything in the XML files to put something like counter or anything.
Can you please advice me or give any hint that how should i store experiments with their XML files with their unique key. Another thing when i have new experiment XML files to store how to store them
any help and any hint will help in a great manner
regards
Imran Sabir

Google http://www.oradev.com/xml.jsp
http://articles.techrepublic.com.com/5100-22-5075453.html

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/****** Object: StoredProcedure [dbo].[MN_Process_DDLSchema_Changes] Script Date: 3/11/2015 3:10:42 PM ******/
SET ANSI_NULLS ON
GO
SET QUOTED_IDENTIFIER ON
GO
-- EXEC [dbo].[MN_Process_DDLSchema_Changes]
ALTER PROCEDURE [dbo].[MN_Process_DDLSchema_Changes]
AS
BEGIN
SET NOCOUNT ON --Does'nt have impact ( May be this wont on SQL Server Extended events session's being created on Server(s) , DB's )
SET TRANSACTION ISOLATION LEVEL READ UNCOMMITTED
select getdate() as getdate_0
DECLARE @XML XML , @Prev_Insertion_time DATETIME
-- Staging Previous Load time for filtering purpose ( Performance optimize while on insert )
SET @Prev_Insertion_time = (SELECT MAX(EE_Time_Stamp) FROM dbo.MN_DDLSchema_Changes_log ) -- Perf Optimize
-- PRINT '1'
CREATE TABLE #Temp
EventName VARCHAR(100),
Time_Stamp_EE DATETIME,
ObjectName VARCHAR(100),
ObjectType VARCHAR(100),
DbName VARCHAR(100),
ddl_Phase VARCHAR(50),
ClientAppName VARCHAR(2000),
ClientHostName VARCHAR(100),
server_instance_name VARCHAR(100),
ServerPrincipalName VARCHAR(100),
nt_username varchar(100),
SqlText NVARCHAR(MAX)
CREATE TABLE #XML_Hold
ID INT NOT NULL IDENTITY(1,1) PRIMARY KEY , -- PK necessity for Indexing on XML Col
BufferXml XML
select getdate() as getdate_01
INSERT INTO #XML_Hold (BufferXml)
SELECT
CAST(target_data AS XML) AS BufferXml -- Buffer Storage from SQL Extended Event(s) , Looks like there is a limitation with xml size ?? Need to re-search .
FROM sys.dm_xe_session_targets xet
INNER JOIN sys.dm_xe_sessions xes
ON xes.address = xet.event_session_address
WHERE xes.name = 'Capture DDL Schema Changes' --Ryelugu : 03/05/2015 Session being created withing SQL Server Extended Events
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--SELECT * FROM #XML_Hold
select getdate() as getdate_1
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CREATE SELECTIVE XML INDEX SXI_TimeStamp ON #XML_Hold(BufferXml)
FOR
PathTimeStamp ='/RingBufferTarget/event/timestamp' AS XQUERY 'node()'
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--SELECT GETDATE() AS GETDATE_2
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--USING XML INDEX [IX_XML_Hold]
---- FOR VALUE
-- --FOR PROPERTY
-- FOR PATH
--SELECT GETDATE() AS GETDATE_3
--PRINT '2'
-- RETURN
SELECT GETDATE() GETDATE_3
INSERT INTO #Temp
EventName ,
Time_Stamp_EE ,
ObjectName ,
ObjectType,
DbName ,
ddl_Phase ,
ClientAppName ,
ClientHostName,
server_instance_name,
nt_username,
ServerPrincipalName ,
SqlText
SELECT
p.q.value('@name[1]','varchar(100)') AS eventname,
p.q.value('@timestamp[1]','datetime') AS timestampvalue,
p.q.value('(./data[@name="object_name"]/value)[1]','varchar(100)') AS objectname,
p.q.value('(./data[@name="object_type"]/text)[1]','varchar(100)') AS ObjectType,
p.q.value('(./action[@name="database_name"]/value)[1]','varchar(100)') AS databasename,
p.q.value('(./data[@name="ddl_phase"]/text)[1]','varchar(100)') AS ddl_phase,
p.q.value('(./action[@name="client_app_name"]/value)[1]','varchar(100)') AS clientappname,
p.q.value('(./action[@name="client_hostname"]/value)[1]','varchar(100)') AS clienthostname,
p.q.value('(./action[@name="server_instance_name"]/value)[1]','varchar(100)') AS server_instance_name,
p.q.value('(./action[@name="nt_username"]/value)[1]','varchar(100)') AS nt_username,
p.q.value('(./action[@name="server_principal_name"]/value)[1]','varchar(100)') AS serverprincipalname,
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p.q.value('@timestamp[1]','datetime') >= ISNULL(@Prev_Insertion_time ,p.q.value('@timestamp[1]','datetime'))
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AND p.q.value('(./data[@name="object_type"]/text)[1]','varchar(100)') <> 'STATISTICS' --Ryelugu 03/06/2015 - May be SQL Server Internally Creates Statistics for #Temp tables , we do not want Creation of STATISTICS Statement to be logged
AND p.q.value('(./data[@name="object_name"]/value)[1]','varchar(100)') NOT LIKE '%#%' -- Any stored proc which creates a temp table within it Extended Event does capture this creation statement SQL as well , we dont need it though
AND p.q.value('(./action[@name="client_app_name"]/value)[1]','varchar(100)') <> 'Replication Monitor' --Ryelugu : 03/09/2015 We do not want any records being caprutred by Replication Monitor ??
SELECT GETDATE() GETDATE_4
-- SELECT * FROM #TEMP
-- SELECT COUNT(*) FROM #TEMP
-- SELECT GETDATE()
-- RETURN
-- PRINT '3'
--RETURN
INSERT INTO [dbo].[MN_DDLSchema_Changes_log]
[UserName]
,[DbName]
,[ObjectName]
,[client_app_name]
,[ClientHostName]
,[ServerName]
,[SQL_TEXT]
,[EE_Time_Stamp]
,[Event_Name]
SELECT
CASE WHEN T.nt_username IS NULL OR LEN(T.nt_username) = 0 THEN t.ServerPrincipalName
ELSE T.nt_username
END
,T.DbName
,T.objectname
,T.clientappname
,t.ClientHostName
,T.server_instance_name
,T.sqltext
,T.Time_Stamp_EE
,T.eventname
FROM
#TEMP T
/** -- RYelugu 03/06/2015 - Filters are now being applied directly while retrieving records from BUFFER or on XML
-- Ryelugu 03/15/2015 - More filters are likely to be added on further testing
WHERE ddl_Phase ='Commit'
AND ObjectType <> 'STATISTICS' --Ryelugu 03/06/2015 - May be SQL Server Internally Creates Statistics for #Temp tables , we do not want Creation of STATISTICS Statement to be logged
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AND NOT EXISTS ( SELECT 1 FROM [dbo].[MN_DDLSchema_Changes_log] MN
WHERE MN.[ServerName] = T.server_instance_name -- Ryelugu Server Name needes to be added on to to xml ( Events in session )
AND MN.[DbName] = T.DbName
AND MN.[Event_Name] = T.EventName
AND MN.[ObjectName]= T.ObjectName
AND MN.[EE_Time_Stamp] = T.Time_Stamp_EE
AND MN.[SQL_TEXT] =T.SqlText -- Ryelugu 03/05/2015 This is a comparision Metric as well , But needs to decide on
-- Peformance Factor here , Will take advise from Lance if comparision on varchar(max) is a vital idea
--SELECT GETDATE()
--PRINT '4'
--RETURN
SELECT
top 100
[EE_Time_Stamp]
,[ServerName]
,[DbName]
,[Event_Name]
,[ObjectName]
,[UserName]
,[SQL_TEXT]
,[client_app_name]
,[Created_Date]
,[ClientHostName]
FROM
[dbo].[MN_DDLSchema_Changes_log]
ORDER BY [EE_Time_Stamp] desc
-- select getdate()
-- ** DELETE EVENTS after logging into Physical table
-- NEED TO Identify if this @XML can be updated into physical system table such that previously loaded events are left untoched
-- SET @XML.modify('delete /event/class/.[@timestamp="2015-03-06T13:01:19.020Z"]')
-- SELECT @XML
SELECT GETDATE() GETDATE_5
END
GO
Rajkumar Yelugu

@@Version : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Microsoft SQL Server 2012 - 11.0.5058.0 (X64)
   May 14 2014 18:34:29
   Copyright (c) Microsoft Corporation
   Developer Edition (64-bit) on Windows NT 6.2 <X64> (Build 9200: ) (Hypervisor)
(1 row(s) affected)
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     at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
     at java.awt.Component.processMouseEvent(Component.java:6263)
     at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
     at java.awt.Component.processEvent(Component.java:6028)
     at java.awt.Container.processEvent(Container.java:2041)
     at java.awt.Component.dispatchEventImpl(Component.java:4630)
     at java.awt.Container.dispatchEventImpl(Container.java:2099)
     at java.awt.Component.dispatchEvent(Component.java:4460)
     at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574)
     at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
     at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
     at java.awt.Container.dispatchEventImpl(Container.java:2085)
     at java.awt.Window.dispatchEventImpl(Window.java:2478)
     at java.awt.Component.dispatchEvent(Component.java:4460)
     at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
     at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
     at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
     at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
     at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
The error comes up when testing the XML Data Server in the Topology Manager
I pasted a segment of the XML below. Notice that the <QueryAlignmentSequence> value might be a large string, as large as 6000 bytes.
I also tried setting the varchar_length above 4000 in the external database .properties file that the XML driver reads, but the I get this error (which makes sense):
java.sql.SQLException: ORA-00910: specified length too long for its datatype
     at com.sunopsis.jdbc.driver.xml.bz.execute(bz.java:109)
     at com.sunopsis.jdbc.driver.xml.ca.execute(ca.java:30)
     at com.sunopsis.xmlfifth.h.u.a(u.java:198)
     at com.sunopsis.xmlfifth.h.bj.a(bj.java:52)
How can I import this? If I use the default "In Memory" XML connection, I get a Null pointer exception when I try to reverse it, per this other thread I posted
Unable to Reverse an XML file
I am dead in the water and getting very disappointed by this tool..
Please help
<Query><Name>IOH36464</Name><Header>IOH36464</Header><Length>5076</Length><Targets><Target><Name>NM_033380.1</Name><NcbiGeneId>1287</NcbiGeneId><GeneSymbol>COL4A5</GeneSymbol><TaxonomyId>9606</TaxonomyId><Description>Homo sapiens collagen, type IV, alpha 5 (COL4A5), transcript variant 2, mRNA</Description><Length>6445</Length><TargetAlignments><TargetAlignment><QueryStart>1</QueryStart><QueryEnd>5075</QueryEnd><TargetStart>203</TargetStart><TargetEnd>5277</TargetEnd><BitScore>10060.9</BitScore><PercentIdentity>100</PercentIdentity><Score>5075</Score><QueryAlignmentSequence>ATGAAACTGCGTGGAGTCAGCCTGGCTGCCGGCTTGTTCTTACTGGCCCTGAGTCTTTGGGGGCAGCCTGCAGAGGCTGCGGCTTGCTATGGGTGTTCTCCAGGATCAAAGTGTGACTGCAGTGGCATAAAAGGGGAAAAGGGAGAGAGAGGGTTTCCAGGTTTGGAAGGACACCCAGGATTGCCTGGATTTCCAGGTCCAGAAGGGCCTCCGGGGCCTCGGGGACAAAAGGGTGATGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAGGTCCTCCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTTCCTGGAATGCCAGGCCACGATGGGGCCCCAGGACCTCAAGGTATTCCCGGATGCAATGGAACCAAGGGAGAACGTGGATTTCCAGGCAGTCCCGGTTTTCCTGGTTTACAGGGTCCTCCAGGACCCCCTGGGATCCCAGGTATGAAGGGTGAACCAGGTAGTATAATTATGTCATCACTGCCAGGACCAAAGGGTAATCCAGGATATCCAGGTCCTCCTGGAATACAAGGCCTACCTGGTCCCACTGGTATACCAGGGCCAATTGGTCCCCCAGGACCACCAGGTTTGATGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGGGAATATGGGCTTAAATTTCCAGGGACCCAAAGGTGAAAAAGGTGAGCAAGGTCTTCAGGGCCCACCTGGGCCACCTGGGCAGATCAGTGAACAGAAAAGACCAATTGATGTAGAGTTTCAGAAAGGAGATCAGGGACTTCCTGGTGACCGAGGGCCTCCTGGACCTCCAGGGATACGTGGTCCTCCAGGTCCCCCAGGTGGTGAGAAAGGTGAGAAGGGTGAGCAAGGAGAGCCAGGCAAAAGAGGTAAACCAGGCAAAGATGGAGAAAATGGCCAACCAGGAATTCCTGGTTTGCCTGGTGATCCTGGTTACCCTGGTGAACCCGGAAGGGATGGTGAAAAGGGCCAAAAAGGTGACACTGGCCCACCTGGACCTCCTGGACTTGTAATTCCTAGACCTGGGACTGGTATAACTATAGGAGAAAAAGGAAACATTGGGTTGCCTGGGTTGCCTGGAGAAAAAGGAGAGCGAGGATTTCCTGGAATACAGGGTCCACCTGGCCTTCCTGGACCTCCAGGGGCTGCAGTTATGGGTCCTCCTGGCCCTCCTGGATTTCCTGGAGAAAGGGGTCAGAAAGGTGATGAAGGACCACCTGGAATTTCCATTCCTGGACCTCCTGGACTTGACGGACAGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCTGGCCCTCACATTCCTCCTAGTGATGAGATATGTGAACCAGGCCCTCCAGGCCCCCCAGGATCTCCAGGTGATAAAGGACTCCAAGGAGAACAAGGAGTGAAAGGTGACAAAGGTGACACTTGCTTCAACTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTGGTTTGCCAGGTCTCCCAGGTCCTCCAGGATCTCTTGGTTTCCCTGGACAGAAAGGGGAAAAAGGACAAGCTGGTGCAACTGGTCCCAAAGGATTACCAGGCATTCCAGGAGCTCCAGGTGCTCCAGGCTTTCCTGGATCTAAAGGTGAACCTGGTGATATCCTCACTTTTCCAGGAATGAAGGGTGACAAAGGAGAGTTGGGTTCCCCTGGAGCTCCAGGGCTTCCTGGTTTACCTGGCACTCCTGGACAGGATGGATTGCCAGGGCTTCCTGGCCCGAAAGGAGAGCCTGGTGGAATTACTTTTAAGGGTGAAAGAGGTCCCCCTGGGAACCCAGGTTTACCAGGCCTCCCAGGGAATATAGGGCCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGGTGAAAAAGGCATACAAGGTGTGGCAGGAAATCCAGGCCAGCCAGGAATACCAGGTCCTAAAGGGGATCCAGGTCAGACTATAACCCAGCCGGGGAAGCCTGGCTTGCCTGGTAACCCAGGCAGAGATGGTGATGTAGGTCTTCCAGGTGACCCTGGACTTCCAGGGCAACCAGGCTTGCCAGGGATACCTGGTAGCAAAGGAGAACCAGGTATCCCTGGAATTGGGCTTCCTGGACCACCTGGTCCCAAAGGCTTTCCTGGAATTCCAGGACCTCCAGGAGCACCTGGGACACCTGGAAGAATTGGTCTAGAAGGCCCTCCTGGGCCACCCGGCTTTCCAGGACCAAAGGGTGAACCAGGATTTGCATTACCTGGGCCACCTGGGCCACCAGGACTTCCAGGTTTCAAAGGAGCACTTGGTCCAAAAGGTGATCGTGGTTTCCCAGGACCTCCGGGTCCTCCAGGACGCACTGGCTTAGATGGGCTCCCTGGACCAAAAGGTGATGTTGGACCAAATGGACAACCTGGACCAATGGGACCTCCTGGGCTGCCAGGAATAGGTGTTCAGGGACCACCAGGACCACCAGGGATTCCTGGGCCAATAGGTCAACCTGGTTTACATGGAATACCAGGAGAGAAGGGGGATCCAGGACCTCCTGGACTTGATGTTCCAGGACCCCCAGGTGAAAGAGGCAGTCCAGGGATCCCCGGAGCACCTGGTCCTATAGGACCTCCAGGATCACCAGGGCTTCCAGGAAAAGCAGGTGCCTCTGGATTTCCAGGTACCAAAGGTGAAATGGGTATGATGGGACCTCCAGGCCCACCAGGACCTTTGGGAATTCCTGGCAGGAGTGGTGTACCTGGTCTTAAAGGTGATGATGGCTTGCAGGGTCAGCCAGGACTTCCTGGCCCTACAGGAGAAAAAGGTAGTAAAGGAGAGCCTGGCCTTCCAGGCCCTCCTGGACCAATGGATCCAAATCTTCTGGGCTCAAAAGGAGAGAAGGGGGAACCTGGCTTACCAGGTATACCTGGAGTTTCAGGGCCAAAAGGTTATCAGGGTTTGCCTGGAGACCCAGGGCAACCTGGACTGAGTGGACAACCTGGATTACCAGGACCACCAGGTCCCAAAGGTAACCCTGGTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTTAAAGGAACCATCGGTGATATGGGTTTTCCAGGGCCTCAGGGTGTGGAAGGGCCTCCTGGACCTTCTGGAGTTCCTGGACAACCTGGCTCCCCAGGATTACCTGGACAGAAAGGCGACAAAGGTGATCCTGGTATTTCAAGCATTGGTCTTCCAGGTCTTCCTGGTCCAAAGGGTGAGCCTGGTCTGCCTGGATACCCAGGGAACCCTGGTATCAAAGGTTCTGTGGGAGATCCTGGTTTGCCCGGATTACCAGGAACCCCTGGAGCAAAAGGACAACCAGGCCTTCCTGGATTCCCAGGAACCCCAGGCCCTCCTGGACCAAAAGGTATTAGTGGCCCTCCTGGGAACCCCGGCCTTCCAGGAGAACCTGGTCCTGTAGGTGGTGGAGGTCATCCTGGGCAACCAGGGCCTCCAGGCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCAGCTGGACAGAAGGGTGAACCAGGTCAACCAGGCTTTGGAAACCCAGGACCCCCTGGACTTCCAGGACTTTCTGGCCAAAAGGGTGATGGAGGATTACCTGGGATTCCAGGAAATCCTGGCCTTCCAGGTCCAAAGGGCGAACCAGGCTTTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCTGGTTCTCCGGGTCCAGCTCTGGAAGGACCTAAAGGCAACCCTGGGCCCCAAGGTCCTCCTGGGAGACCAGGTCCTACAGGTTTTCAAGGTCTACCAGGTCCAGAAGGTCCTCCAGGTCTCCCTGGAAATGGAGGTATTAAAGGAGAGAAGGGAAATCCAGGCCAACCTGGGCTACCTGGCTTGCCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTCCAGGGTAATCCTGGCCGGCCGGGTCTCAATGGAATGAAAGGAGATCCTGGTCTCCCTGGTGTTCCAGGATTCCCAGGCATGAAAGGACCCAGTGGAGTACCTGGATCAGCTGGCCCTGAGGGGGAACCGGGACTTATTGGTCCTCCAGGTCCTCCTGGATTACCTGGTCCTTCAGGACAGAGTATCATAATTAAAGGAGATGCTGGTCCTCCAGGAATCCCTGGCCAGCCTGGGCTAAAGGGTCTACCAGGACCCCAAGGACCTCAAGGCTTACCAGGTCCAACTGGCCCTCCAGGAGATCCTGGACGCAATGGACTCCCTGGCTTTGATGGTGCAGGAGGGCGCAAAGGAGACCCAGGTCTGCCAGGACAGCCAGGTACCCGTGGTTTGGATGGTCCCCCTGGTCCAGATGGATTGCAAGGTCCCCCAGGTCCCCCTGGAACCTCCTCTGTTGCACATGGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACCACAATGCCCACAGGGAACACTTCAGGTCTATGAAGGCTTTTCTCTCCTGTATGTACAAGGAAATAAAAGAGCCCACGGTCAAGACTTGGGGACGGCTGGCAGCTGCCTTCGTCGCTTTAGTACCATGCCTTTCATGTTCTGCAACATCAATAATGTTTGCAACTTTGCTTCAAGAAATGACTATTCTTACTGGCTCTCTACCCCAGAGCCCATGCCAATGAGCATGCAACCCCTAAAGGGCCAGAGCATCCAGCCATTCATTAGTCGATGTGCAGTATGTGAAGCTCCAGCTGTGGTGATCGCAGTTCACAGTCAGACGATCCAGATTCCCCATTGTCCTCAGGGATGGGATTCTCTGTGGATTGGTTATTCCTTCATGATGCATACAAGTGCAGGGGCAGAAGGCTCAGGTCAAGCCCTAGCCTCCCCTGGTTCCTGCTTGGAAGAGTTTCGTTCAGCTCCCTTCATCGAATGTCATGGGAGGGGTACCTGTAACTACTATGCCAACTCCTACAGCTTTTGGCTGGCAACTGTAGATGTGTCAGACATGTTCAGTAAACCTCAGTCAGAAACGCTGAAAGCAGGAGACTTGAGGACACGAATTAGCCGATGTCAAGTGTGCATGAAGAGGACATA</QueryAlignmentSequence><TargetAlignmentSequence>ATGAAACTGCGTGGAGTCAGCCTGGCTGCCGGCTTGTTCTTACTGGCCCTGAGTCTTTGGGGGCAGCCTGCAGAGGCTGCGGCTTGCTATGGGTGTTCTCCAGGATCAAAGTGTGACTGCAGTGGCATAAAAGGGGAAAAGGGAGAGAGAGGGTTTCCAGGTTTGGAAGGACACCCAGGATTGCCTGGATTTCCAGGTCCAGAAGGGCCTCCGGGGCCTCGGGGACAAAAGGGTGATGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAGGTCCTCCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTTCCTGGAATGCCAGGCCACGATGGGGCCCCAGGACCTCAAGGTATTCCCGGATGCAATGGAACCAAGGGAGAACGTGGATTTCCAGGCAGTCCCGGTTTTCCTGGTTTACAGGGTCCTCCAGGACCCCCTGGGATCCCAGGTATGAAGGGTGAACCAGGTAGTATAATTATGTCATCACTGCCAGGACCAAAGGGTAATCCAGGATATCCAGGTCCTCCTGGAATACAAGGCCTACCTGGTCCCACTGGTATACCAGGGCCAATTGGTCCCCCAGGACCACCAGGTTTGATGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGGGAATATGGGCTTAAATTTCCAGGGACCCAAAGGTGAAAAAGGTGAGCAAGGTCTTCAGGGCCCACCTGGGCCACCTGGGCAGATCAGTGAACAGAAAAGACCAATTGATGTAGAGTTTCAGAAAGGAGATCAGGGACTTCCTGGTGACCGAGGGCCTCCTGGACCTCCAGGGATACGTGGTCCTCCAGGTCCCCCAGGTGGTGAGAAAGGTGAGAAGGGTGAGCAAGGAGAGCCAGGCAAAAGAGGTAAACCAGGCAAAGATGGAGAAAATGGCCAACCAGGAATTCCTGGTTTGCCTGGTGATCCTGGTTACCCTGGTGAACCCGGAAGGGATGGTGAAAAGGGCCAAAAAGGTGACACTGGCCCACCTGGACCTCCTGGACTTGTAATTCCTAGACCTGGGACTGGTATAACTATAGGAGAAAAAGGAAACATTGGGTTGCCTGGGTTGCCTGGAGAAAAAGGAGAGCGAGGATTTCCTGGAATACAGGGTCCACCTGGCCTTCCTGGACCTCCAGGGGCTGCAGTTATGGGTCCTCCTGGCCCTCCTGGATTTCCTGGAGAAAGGGGTCAGAAAGGTGATGAAGGACCACCTGGAATTTCCATTCCTGGACCTCCTGGACTTGACGGACAGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCTGGCCCTCACATTCCTCCTAGTGATGAGATATGTGAACCAGGCCCTCCAGGCCCCCCAGGATCTCCAGGTGATAAAGGACTCCAAGGAGAACAAGGAGTGAAAGGTGACAAAGGTGACACTTGCTTCAACTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTGGTTTGCCAGGTCTCCCAGGTCCTCCAGGATCTCTTGGTTTCCCTGGACAGAAAGGGGAAAAAGGACAAGCTGGTGCAACTGGTCCCAAAGGATTACCAGGCATTCCAGGAGCTCCAGGTGCTCCAGGCTTTCCTGGATCTAAAGGTGAACCTGGTGATATCCTCACTTTTCCAGGAATGAAGGGTGACAAAGGAGAGTTGGGTTCCCCTGGAGCTCCAGGGCTTCCTGGTTTACCTGGCACTCCTGGACAGGATGGATTGCCAGGGCTTCCTGGCCCGAAAGGAGAGCCTGGTGGAATTACTTTTAAGGGTGAAAGAGGTCCCCCTGGGAACCCAGGTTTACCAGGCCTCCCAGGGAATATAGGGCCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGGTGAAAAAGGCATACAAGGTGTGGCAGGAAATCCAGGCCAGCCAGGAATACCAGGTCCTAAAGGGGATCCAGGTCAGACTATAACCCAGCCGGGGAAGCCTGGCTTGCCTGGTAACCCAGGCAGAGATGGTGATGTAGGTCTTCCAGGTGACCCTGGACTTCCAGGGCAACCAGGCTTGCCAGGGATACCTGGTAGCAAAGGAGAACCAGGTATCCCTGGAATTGGGCTTCCTGGACCACCTGGTCCCAAAGGCTTTCCTGGAATTCCAGGACCTCCAGGAGCACCTGGGACACCTGGAAGAATTGGTCTAGAAGGCCCTCCTGGGCCACCCGGCTTTCCAGGACCAAAGGGTGAACCAGGATTTGCATTACCTGGGCCACCTGGGCCACCAGGACTTCCAGGTTTCAAAGGAGCACTTGGTCCAAAAGGTGATCGTGGTTTCCCAGGACCTCCGGGTCCTCCAGGACGCACTGGCTTAGATGGGCTCCCTGGACCAAAAGGTGATGTTGGACCAAATGGACAACCTGGACCAATGGGACCTCCTGGGCTGCCAGGAATAGGTGTTCAGGGACCACCAGGACCACCAGGGATTCCTGGGCCAATAGGTCAACCTGGTTTACATGGAATACCAGGAGAGAAGGGGGATCCAGGACCTCCTGGACTTGATGTTCCAGGACCCCCAGGTGAAAGAGGCAGTCCAGGGATCCCCGGAGCACCTGGTCCTATAGGACCTCCAGGATCACCAGGGCTTCCAGGAAAAGCAGGTGCCTCTGGATTTCCAGGTACCAAAGGTGAAATGGGTATGATGGGACCTCCAGGCCCACCAGGACCTTTGGGAATTCCTGGCAGGAGTGGTGTACCTGGTCTTAAAGGTGATGATGGCTTGCAGGGTCAGCCAGGACTTCCTGGCCCTACAGGAGAAAAAGGTAGTAAAGGAGAGCCTGGCCTTCCAGGCCCTCCTGGACCAATGGATCCAAATCTTCTGGGCTCAAAAGGAGAGAAGGGGGAACCTGGCTTACCAGGTATACCTGGAGTTTCAGGGCCAAAAGGTTATCAGGGTTTGCCTGGAGACCCAGGGCAACCTGGACTGAGTGGACAACCTGGATTACCAGGACCACCAGGTCCCAAAGGTAACCCTGGTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTTAAAGGAACCATCGGTGATATGGGTTTTCCAGGGCCTCAGGGTGTGGAAGGGCCTCCTGGACCTTCTGGAGTTCCTGGACAACCTGGCTCCCCAGGATTACCTGGACAGAAAGGCGACAAAGGTGATCCTGGTATTTCAAGCATTGGTCTTCCAGGTCTTCCTGGTCCAAAGGGTGAGCCTGGTCTGCCTGGATACCCAGGGAACCCTGGTATCAAAGGTTCTGTGGGAGATCCTGGTTTGCCCGGATTACCAGGAACCCCTGGAGCAAAAGGACAACCAGGCCTTCCTGGATTCCCAGGAACCCCAGGCCCTCCTGGACCAAAAGGTATTAGTGGCCCTCCTGGGAACCCCGGCCTTCCAGGAGAACCTGGTCCTGTAGGTGGTGGAGGTCATCCTGGGCAACCAGGGCCTCCAGGCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCAGCTGGACAGAAGGGTGAACCAGGTCAACCAGGCTTTGGAAACCCAGGACCCCCTGGACTTCCAGGACTTTCTGGCCAAAAGGGTGATGGAGGATTACCTGGGATTCCAGGAAATCCTGGCCTTCCAGGTCCAAAGGGCGAACCAGGCTTTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCTGGTTCTCCGGGTCCAGCTCTGGAAGGACCTAAAGGCAACCCTGGGCCCCAAGGTCCTCCTGGGAGACCAGGTCCTACAGGTTTTCAAGGTCTACCAGGTCCAGAAGGTCCTCCAGGTCTCCCTGGAAATGGAGGTATTAAAGGAGAGAAGGGAAATCCAGGCCAACCTGGGCTACCTGGCTTGCCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTCCAGGGTAATCCTGGCCGGCCGGGTCTCAATGGAATGAAAGGAGATCCTGGTCTCCCTGGTGTTCCAGGATTCCCAGGCATGAAAGGACCCAGTGGAGTACCTGGATCAGCTGGCCCTGAGGGGGAACCGGGACTTATTGGTCCTCCAGGTCCTCCTGGATTACCTGGTCCTTCAGGACAGAGTATCATAATTAAAGGAGATGCTGGTCCTCCAGGAATCCCTGGCCAGCCTGGGCTAAAGGGTCTACCAGGACCCCAAGGACCTCAAGGCTTACCAGGTCCAACTGGCCCTCCAGGAGATCCTGGACGCAATGGACTCCCTGGCTTTGATGGTGCAGGAGGGCGCAAAGGAGACCCAGGTCTGCCAGGACAGCCAGGTACCCGTGGTTTGGATGGTCCCCCTGGTCCAGATGGATTGCAAGGTCCCCCAGGTCCCCCTGGAACCTCCTCTGTTGCACATGGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACCACAATGCCCACAGGGAACACTTCAGGTCTATGAAGGCTTTTCTCTCCTGTATGTACAAGGAAATAAAAGAGCCCACGGTCAAGACTTGGGGACGGCTGGCAGCTGCCTTCGTCGCTTTAGTACCATGCCTTTCATGTTCTGCAACATCAATAATGTTTGCAACTTTGCTTCAAGAAATGACTATTCTTACTGGCTCTCTACCCCAGAGCCCATGCCAATGAGCATGCAACCCCTAAAGGGCCAGAGCATCCAGCCATTCATTAGTCGATGTGCAGTATGTGAAGCTCCAGCTGTGGTGATCGCAGTTCACAGTCAGACGATCCAGATTCCCCATTGTCCTCAGGGATGGGATTCTCTGTGGATTGGTTATTCCTTCATGATGCATACAAGTGCAGGGGCAGAAGGCTCAGGTCAAGCCCTAGCCTCCCCTGGTTCCTGCTTGGAAGAGTTTCGTTCAGCTCCCTTCATCGAATGTCATGGGAGGGGTACCTGTAACTACTATGCCAACTCCTACAGCTTTTGGCTGGCAACTGTAGATGTGTCAGACATGTTCAGTAAACCTCAGTCAGAAACGCTGAAAGCAGGAGACTTGAGGACACGAATTAGCCGATGTCAAGTGTGCATGAAGAGGACATA</TargetAlignmentSequence>

Hi,
I am getting this error when trying to use an external database for the XML driver, in order to load a large XML file.
java.sql.SQLException: class org.xml.sax.SAXException
ORA-01461: can bind a LONG value only for insert into a LONG column
     at com.sunopsis.jdbc.driver.xml.v.a(v.java:446)
     at com.sunopsis.jdbc.driver.xml.v.a(v.java:456)
     at com.sunopsis.jdbc.driver.xml.v.g(v.java:631)
     at com.sunopsis.jdbc.driver.xml.v.<init>(v.java:108)
     at com.sunopsis.jdbc.driver.xml.bw.<init>(bw.java:468)
     at com.sunopsis.jdbc.driver.xml.bx.b(bx.java:292)
     at com.sunopsis.jdbc.driver.xml.bx.a(bx.java:270)
     at com.sunopsis.jdbc.driver.xml.SnpsXmlDriver.connect(SnpsXmlDriver.java:110)
     at com.sunopsis.sql.SnpsConnection.u(SnpsConnection.java)
     at com.sunopsis.sql.SnpsConnection.a(SnpsConnection.java)
     at com.sunopsis.sql.SnpsConnection.testConnection(SnpsConnection.java)
     at com.sunopsis.sql.SnpsConnection.testConnection(SnpsConnection.java)
     at com.sunopsis.graphical.l.pm.o(pm.java)
     at com.sunopsis.graphical.l.pm.r(pm.java)
     at com.sunopsis.graphical.l.pm.g(pm.java)
     at com.sunopsis.graphical.l.pm.a(pm.java)
     at com.sunopsis.graphical.l.pm.a(pm.java)
     at com.sunopsis.graphical.l.iz.actionPerformed(iz.java)
     at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
     at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
     at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
     at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
     at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
     at java.awt.Component.processMouseEvent(Component.java:6263)
     at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
     at java.awt.Component.processEvent(Component.java:6028)
     at java.awt.Container.processEvent(Container.java:2041)
     at java.awt.Component.dispatchEventImpl(Component.java:4630)
     at java.awt.Container.dispatchEventImpl(Container.java:2099)
     at java.awt.Component.dispatchEvent(Component.java:4460)
     at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574)
     at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
     at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
     at java.awt.Container.dispatchEventImpl(Container.java:2085)
     at java.awt.Window.dispatchEventImpl(Window.java:2478)
     at java.awt.Component.dispatchEvent(Component.java:4460)
     at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
     at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
     at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
     at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:178)
     at java.awt.Dialog$1.run(Dialog.java:1046)
     at java.awt.Dialog$3.run(Dialog.java:1098)
     at java.security.AccessController.doPrivileged(Native Method)
     at java.awt.Dialog.show(Dialog.java:1096)
     at java.awt.Component.show(Component.java:1563)
     at java.awt.Component.setVisible(Component.java:1515)
     at java.awt.Window.setVisible(Window.java:842)
     at java.awt.Dialog.setVisible(Dialog.java:986)
     at com.sunopsis.graphical.l.pm.q(pm.java)
     at com.sunopsis.graphical.l.pm.<init>(pm.java)
     at com.sunopsis.graphical.frame.b.jh.bx(jh.java)
     at com.sunopsis.graphical.frame.bo.w(bo.java)
     at com.sunopsis.graphical.frame.bo.d(bo.java)
     at com.sunopsis.graphical.frame.w.actionPerformed(w.java)
     at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
     at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
     at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
     at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
     at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
     at java.awt.Component.processMouseEvent(Component.java:6263)
     at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
     at java.awt.Component.processEvent(Component.java:6028)
     at java.awt.Container.processEvent(Container.java:2041)
     at java.awt.Component.dispatchEventImpl(Component.java:4630)
     at java.awt.Container.dispatchEventImpl(Container.java:2099)
     at java.awt.Component.dispatchEvent(Component.java:4460)
     at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574)
     at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
     at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
     at java.awt.Container.dispatchEventImpl(Container.java:2085)
     at java.awt.Window.dispatchEventImpl(Window.java:2478)
     at java.awt.Component.dispatchEvent(Component.java:4460)
     at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
     at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
     at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
     at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
     at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
The error comes up when testing the XML Data Server in the Topology Manager
I pasted a segment of the XML below. Notice that the <QueryAlignmentSequence> value might be a large string, as large as 6000 bytes.
I also tried setting the varchar_length above 4000 in the external database .properties file that the XML driver reads, but the I get this error (which makes sense):
java.sql.SQLException: ORA-00910: specified length too long for its datatype
     at com.sunopsis.jdbc.driver.xml.bz.execute(bz.java:109)
     at com.sunopsis.jdbc.driver.xml.ca.execute(ca.java:30)
     at com.sunopsis.xmlfifth.h.u.a(u.java:198)
     at com.sunopsis.xmlfifth.h.bj.a(bj.java:52)
How can I import this? If I use the default "In Memory" XML connection, I get a Null pointer exception when I try to reverse it, per this other thread I posted
Unable to Reverse an XML file
I am dead in the water and getting very disappointed by this tool..
Please help
<Query><Name>IOH36464</Name><Header>IOH36464</Header><Length>5076</Length><Targets><Target><Name>NM_033380.1</Name><NcbiGeneId>1287</NcbiGeneId><GeneSymbol>COL4A5</GeneSymbol><TaxonomyId>9606</TaxonomyId><Description>Homo sapiens collagen, type IV, alpha 5 (COL4A5), transcript variant 2, mRNA</Description><Length>6445</Length><TargetAlignments><TargetAlignment><QueryStart>1</QueryStart><QueryEnd>5075</QueryEnd><TargetStart>203</TargetStart><TargetEnd>5277</TargetEnd><BitScore>10060.9</BitScore><PercentIdentity>100</PercentIdentity><Score>5075</Score><QueryAlignmentSequence>ATGAAACTGCGTGGAGTCAGCCTGGCTGCCGGCTTGTTCTTACTGGCCCTGAGTCTTTGGGGGCAGCCTGCAGAGGCTGCGGCTTGCTATGGGTGTTCTCCAGGATCAAAGTGTGACTGCAGTGGCATAAAAGGGGAAAAGGGAGAGAGAGGGTTTCCAGGTTTGGAAGGACACCCAGGATTGCCTGGATTTCCAGGTCCAGAAGGGCCTCCGGGGCCTCGGGGACAAAAGGGTGATGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAGGTCCTCCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTTCCTGGAATGCCAGGCCACGATGGGGCCCCAGGACCTCAAGGTATTCCCGGATGCAATGGAACCAAGGGAGAACGTGGATTTCCAGGCAGTCCCGGTTTTCCTGGTTTACAGGGTCCTCCAGGACCCCCTGGGATCCCAGGTATGAAGGGTGAACCAGGTAGTATAATTATGTCATCACTGCCAGGACCAAAGGGTAATCCAGGATATCCAGGTCCTCCTGGAATACAAGGCCTACCTGGTCCCACTGGTATACCAGGGCCAATTGGTCCCCCAGGACCACCAGGTTTGATGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGGGAATATGGGCTTAAATTTCCAGGGACCCAAAGGTGAAAAAGGTGAGCAAGGTCTTCAGGGCCCACCTGGGCCACCTGGGCAGATCAGTGAACAGAAAAGACCAATTGATGTAGAGTTTCAGAAAGGAGATCAGGGACTTCCTGGTGACCGAGGGCCTCCTGGACCTCCAGGGATACGTGGTCCTCCAGGTCCCCCAGGTGGTGAGAAAGGTGAGAAGGGTGAGCAAGGAGAGCCAGGCAAAAGAGGTAAACCAGGCAAAGATGGAGAAAATGGCCAACCAGGAATTCCTGGTTTGCCTGGTGATCCTGGTTACCCTGGTGAACCCGGAAGGGATGGTGAAAAGGGCCAAAAAGGTGACACTGGCCCACCTGGACCTCCTGGACTTGTAATTCCTAGACCTGGGACTGGTATAACTATAGGAGAAAAAGGAAACATTGGGTTGCCTGGGTTGCCTGGAGAAAAAGGAGAGCGAGGATTTCCTGGAATACAGGGTCCACCTGGCCTTCCTGGACCTCCAGGGGCTGCAGTTATGGGTCCTCCTGGCCCTCCTGGATTTCCTGGAGAAAGGGGTCAGAAAGGTGATGAAGGACCACCTGGAATTTCCATTCCTGGACCTCCTGGACTTGACGGACAGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCTGGCCCTCACATTCCTCCTAGTGATGAGATATGTGAACCAGGCCCTCCAGGCCCCCCAGGATCTCCAGGTGATAAAGGACTCCAAGGAGAACAAGGAGTGAAAGGTGACAAAGGTGACACTTGCTTCAACTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTGGTTTGCCAGGTCTCCCAGGTCCTCCAGGATCTCTTGGTTTCCCTGGACAGAAAGGGGAAAAAGGACAAGCTGGTGCAACTGGTCCCAAAGGATTACCAGGCATTCCAGGAGCTCCAGGTGCTCCAGGCTTTCCTGGATCTAAAGGTGAACCTGGTGATATCCTCACTTTTCCAGGAATGAAGGGTGACAAAGGAGAGTTGGGTTCCCCTGGAGCTCCAGGGCTTCCTGGTTTACCTGGCACTCCTGGACAGGATGGATTGCCAGGGCTTCCTGGCCCGAAAGGAGAGCCTGGTGGAATTACTTTTAAGGGTGAAAGAGGTCCCCCTGGGAACCCAGGTTTACCAGGCCTCCCAGGGAATATAGGGCCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGGTGAAAAAGGCATACAAGGTGTGGCAGGAAATCCAGGCCAGCCAGGAATACCAGGTCCTAAAGGGGATCCAGGTCAGACTATAACCCAGCCGGGGAAGCCTGGCTTGCCTGGTAACCCAGGCAGAGATGGTGATGTAGGTCTTCCAGGTGACCCTGGACTTCCAGGGCAACCAGGCTTGCCAGGGATACCTGGTAGCAAAGGAGAACCAGGTATCCCTGGAATTGGGCTTCCTGGACCACCTGGTCCCAAAGGCTTTCCTGGAATTCCAGGACCTCCAGGAGCACCTGGGACACCTGGAAGAATTGGTCTAGAAGGCCCTCCTGGGCCACCCGGCTTTCCAGGACCAAAGGGTGAACCAGGATTTGCATTACCTGGGCCACCTGGGCCACCAGGACTTCCAGGTTTCAAAGGAGCACTTGGTCCAAAAGGTGATCGTGGTTTCCCAGGACCTCCGGGTCCTCCAGGACGCACTGGCTTAGATGGGCTCCCTGGACCAAAAGGTGATGTTGGACCAAATGGACAACCTGGACCAATGGGACCTCCTGGGCTGCCAGGAATAGGTGTTCAGGGACCACCAGGACCACCAGGGATTCCTGGGCCAATAGGTCAACCTGGTTTACATGGAATACCAGGAGAGAAGGGGGATCCAGGACCTCCTGGACTTGATGTTCCAGGACCCCCAGGTGAAAGAGGCAGTCCAGGGATCCCCGGAGCACCTGGTCCTATAGGACCTCCAGGATCACCAGGGCTTCCAGGAAAAGCAGGTGCCTCTGGATTTCCAGGTACCAAAGGTGAAATGGGTATGATGGGACCTCCAGGCCCACCAGGACCTTTGGGAATTCCTGGCAGGAGTGGTGTACCTGGTCTTAAAGGTGATGATGGCTTGCAGGGTCAGCCAGGACTTCCTGGCCCTACAGGAGAAAAAGGTAGTAAAGGAGAGCCTGGCCTTCCAGGCCCTCCTGGACCAATGGATCCAAATCTTCTGGGCTCAAAAGGAGAGAAGGGGGAACCTGGCTTACCAGGTATACCTGGAGTTTCAGGGCCAAAAGGTTATCAGGGTTTGCCTGGAGACCCAGGGCAACCTGGACTGAGTGGACAACCTGGATTACCAGGACCACCAGGTCCCAAAGGTAACCCTGGTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTTAAAGGAACCATCGGTGATATGGGTTTTCCAGGGCCTCAGGGTGTGGAAGGGCCTCCTGGACCTTCTGGAGTTCCTGGACAACCTGGCTCCCCAGGATTACCTGGACAGAAAGGCGACAAAGGTGATCCTGGTATTTCAAGCATTGGTCTTCCAGGTCTTCCTGGTCCAAAGGGTGAGCCTGGTCTGCCTGGATACCCAGGGAACCCTGGTATCAAAGGTTCTGTGGGAGATCCTGGTTTGCCCGGATTACCAGGAACCCCTGGAGCAAAAGGACAACCAGGCCTTCCTGGATTCCCAGGAACCCCAGGCCCTCCTGGACCAAAAGGTATTAGTGGCCCTCCTGGGAACCCCGGCCTTCCAGGAGAACCTGGTCCTGTAGGTGGTGGAGGTCATCCTGGGCAACCAGGGCCTCCAGGCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCAGCTGGACAGAAGGGTGAACCAGGTCAACCAGGCTTTGGAAACCCAGGACCCCCTGGACTTCCAGGACTTTCTGGCCAAAAGGGTGATGGAGGATTACCTGGGATTCCAGGAAATCCTGGCCTTCCAGGTCCAAAGGGCGAACCAGGCTTTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCTGGTTCTCCGGGTCCAGCTCTGGAAGGACCTAAAGGCAACCCTGGGCCCCAAGGTCCTCCTGGGAGACCAGGTCCTACAGGTTTTCAAGGTCTACCAGGTCCAGAAGGTCCTCCAGGTCTCCCTGGAAATGGAGGTATTAAAGGAGAGAAGGGAAATCCAGGCCAACCTGGGCTACCTGGCTTGCCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTCCAGGGTAATCCTGGCCGGCCGGGTCTCAATGGAATGAAAGGAGATCCTGGTCTCCCTGGTGTTCCAGGATTCCCAGGCATGAAAGGACCCAGTGGAGTACCTGGATCAGCTGGCCCTGAGGGGGAACCGGGACTTATTGGTCCTCCAGGTCCTCCTGGATTACCTGGTCCTTCAGGACAGAGTATCATAATTAAAGGAGATGCTGGTCCTCCAGGAATCCCTGGCCAGCCTGGGCTAAAGGGTCTACCAGGACCCCAAGGACCTCAAGGCTTACCAGGTCCAACTGGCCCTCCAGGAGATCCTGGACGCAATGGACTCCCTGGCTTTGATGGTGCAGGAGGGCGCAAAGGAGACCCAGGTCTGCCAGGACAGCCAGGTACCCGTGGTTTGGATGGTCCCCCTGGTCCAGATGGATTGCAAGGTCCCCCAGGTCCCCCTGGAACCTCCTCTGTTGCACATGGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACCACAATGCCCACAGGGAACACTTCAGGTCTATGAAGGCTTTTCTCTCCTGTATGTACAAGGAAATAAAAGAGCCCACGGTCAAGACTTGGGGACGGCTGGCAGCTGCCTTCGTCGCTTTAGTACCATGCCTTTCATGTTCTGCAACATCAATAATGTTTGCAACTTTGCTTCAAGAAATGACTATTCTTACTGGCTCTCTACCCCAGAGCCCATGCCAATGAGCATGCAACCCCTAAAGGGCCAGAGCATCCAGCCATTCATTAGTCGATGTGCAGTATGTGAAGCTCCAGCTGTGGTGATCGCAGTTCACAGTCAGACGATCCAGATTCCCCATTGTCCTCAGGGATGGGATTCTCTGTGGATTGGTTATTCCTTCATGATGCATACAAGTGCAGGGGCAGAAGGCTCAGGTCAAGCCCTAGCCTCCCCTGGTTCCTGCTTGGAAGAGTTTCGTTCAGCTCCCTTCATCGAATGTCATGGGAGGGGTACCTGTAACTACTATGCCAACTCCTACAGCTTTTGGCTGGCAACTGTAGATGTGTCAGACATGTTCAGTAAACCTCAGTCAGAAACGCTGAAAGCAGGAGACTTGAGGACACGAATTAGCCGATGTCAAGTGTGCATGAAGAGGACATA</QueryAlignmentSequence><TargetAlignmentSequence>ATGAAACTGCGTGGAGTCAGCCTGGCTGCCGGCTTGTTCTTACTGGCCCTGAGTCTTTGGGGGCAGCCTGCAGAGGCTGCGGCTTGCTATGGGTGTTCTCCAGGATCAAAGTGTGACTGCAGTGGCATAAAAGGGGAAAAGGGAGAGAGAGGGTTTCCAGGTTTGGAAGGACACCCAGGATTGCCTGGATTTCCAGGTCCAGAAGGGCCTCCGGGGCCTCGGGGACAAAAGGGTGATGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAGGTCCTCCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTTCCTGGAATGCCAGGCCACGATGGGGCCCCAGGACCTCAAGGTATTCCCGGATGCAATGGAACCAAGGGAGAACGTGGATTTCCAGGCAGTCCCGGTTTTCCTGGTTTACAGGGTCCTCCAGGACCCCCTGGGATCCCAGGTATGAAGGGTGAACCAGGTAGTATAATTATGTCATCACTGCCAGGACCAAAGGGTAATCCAGGATATCCAGGTCCTCCTGGAATACAAGGCCTACCTGGTCCCACTGGTATACCAGGGCCAATTGGTCCCCCAGGACCACCAGGTTTGATGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGGGAATATGGGCTTAAATTTCCAGGGACCCAAAGGTGAAAAAGGTGAGCAAGGTCTTCAGGGCCCACCTGGGCCACCTGGGCAGATCAGTGAACAGAAAAGACCAATTGATGTAGAGTTTCAGAAAGGAGATCAGGGACTTCCTGGTGACCGAGGGCCTCCTGGACCTCCAGGGATACGTGGTCCTCCAGGTCCCCCAGGTGGTGAGAAAGGTGAGAAGGGTGAGCAAGGAGAGCCAGGCAAAAGAGGTAAACCAGGCAAAGATGGAGAAAATGGCCAACCAGGAATTCCTGGTTTGCCTGGTGATCCTGGTTACCCTGGTGAACCCGGAAGGGATGGTGAAAAGGGCCAAAAAGGTGACACTGGCCCACCTGGACCTCCTGGACTTGTAATTCCTAGACCTGGGACTGGTATAACTATAGGAGAAAAAGGAAACATTGGGTTGCCTGGGTTGCCTGGAGAAAAAGGAGAGCGAGGATTTCCTGGAATACAGGGTCCACCTGGCCTTCCTGGACCTCCAGGGGCTGCAGTTATGGGTCCTCCTGGCCCTCCTGGATTTCCTGGAGAAAGGGGTCAGAAAGGTGATGAAGGACCACCTGGAATTTCCATTCCTGGACCTCCTGGACTTGACGGACAGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCTGGCCCTCACATTCCTCCTAGTGATGAGATATGTGAACCAGGCCCTCCAGGCCCCCCAGGATCTCCAGGTGATAAAGGACTCCAAGGAGAACAAGGAGTGAAAGGTGACAAAGGTGACACTTGCTTCAACTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTGGTTTGCCAGGTCTCCCAGGTCCTCCAGGATCTCTTGGTTTCCCTGGACAGAAAGGGGAAAAAGGACAAGCTGGTGCAACTGGTCCCAAAGGATTACCAGGCATTCCAGGAGCTCCAGGTGCTCCAGGCTTTCCTGGATCTAAAGGTGAACCTGGTGATATCCTCACTTTTCCAGGAATGAAGGGTGACAAAGGAGAGTTGGGTTCCCCTGGAGCTCCAGGGCTTCCTGGTTTACCTGGCACTCCTGGACAGGATGGATTGCCAGGGCTTCCTGGCCCGAAAGGAGAGCCTGGTGGAATTACTTTTAAGGGTGAAAGAGGTCCCCCTGGGAACCCAGGTTTACCAGGCCTCCCAGGGAATATAGGGCCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGGTGAAAAAGGCATACAAGGTGTGGCAGGAAATCCAGGCCAGCCAGGAATACCAGGTCCTAAAGGGGATCCAGGTCAGACTATAACCCAGCCGGGGAAGCCTGGCTTGCCTGGTAACCCAGGCAGAGATGGTGATGTAGGTCTTCCAGGTGACCCTGGACTTCCAGGGCAACCAGGCTTGCCAGGGATACCTGGTAGCAAAGGAGAACCAGGTATCCCTGGAATTGGGCTTCCTGGACCACCTGGTCCCAAAGGCTTTCCTGGAATTCCAGGACCTCCAGGAGCACCTGGGACACCTGGAAGAATTGGTCTAGAAGGCCCTCCTGGGCCACCCGGCTTTCCAGGACCAAAGGGTGAACCAGGATTTGCATTACCTGGGCCACCTGGGCCACCAGGACTTCCAGGTTTCAAAGGAGCACTTGGTCCAAAAGGTGATCGTGGTTTCCCAGGACCTCCGGGTCCTCCAGGACGCACTGGCTTAGATGGGCTCCCTGGACCAAAAGGTGATGTTGGACCAAATGGACAACCTGGACCAATGGGACCTCCTGGGCTGCCAGGAATAGGTGTTCAGGGACCACCAGGACCACCAGGGATTCCTGGGCCAATAGGTCAACCTGGTTTACATGGAATACCAGGAGAGAAGGGGGATCCAGGACCTCCTGGACTTGATGTTCCAGGACCCCCAGGTGAAAGAGGCAGTCCAGGGATCCCCGGAGCACCTGGTCCTATAGGACCTCCAGGATCACCAGGGCTTCCAGGAAAAGCAGGTGCCTCTGGATTTCCAGGTACCAAAGGTGAAATGGGTATGATGGGACCTCCAGGCCCACCAGGACCTTTGGGAATTCCTGGCAGGAGTGGTGTACCTGGTCTTAAAGGTGATGATGGCTTGCAGGGTCAGCCAGGACTTCCTGGCCCTACAGGAGAAAAAGGTAGTAAAGGAGAGCCTGGCCTTCCAGGCCCTCCTGGACCAATGGATCCAAATCTTCTGGGCTCAAAAGGAGAGAAGGGGGAACCTGGCTTACCAGGTATACCTGGAGTTTCAGGGCCAAAAGGTTATCAGGGTTTGCCTGGAGACCCAGGGCAACCTGGACTGAGTGGACAACCTGGATTACCAGGACCACCAGGTCCCAAAGGTAACCCTGGTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTTAAAGGAACCATCGGTGATATGGGTTTTCCAGGGCCTCAGGGTGTGGAAGGGCCTCCTGGACCTTCTGGAGTTCCTGGACAACCTGGCTCCCCAGGATTACCTGGACAGAAAGGCGACAAAGGTGATCCTGGTATTTCAAGCATTGGTCTTCCAGGTCTTCCTGGTCCAAAGGGTGAGCCTGGTCTGCCTGGATACCCAGGGAACCCTGGTATCAAAGGTTCTGTGGGAGATCCTGGTTTGCCCGGATTACCAGGAACCCCTGGAGCAAAAGGACAACCAGGCCTTCCTGGATTCCCAGGAACCCCAGGCCCTCCTGGACCAAAAGGTATTAGTGGCCCTCCTGGGAACCCCGGCCTTCCAGGAGAACCTGGTCCTGTAGGTGGTGGAGGTCATCCTGGGCAACCAGGGCCTCCAGGCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCAGCTGGACAGAAGGGTGAACCAGGTCAACCAGGCTTTGGAAACCCAGGACCCCCTGGACTTCCAGGACTTTCTGGCCAAAAGGGTGATGGAGGATTACCTGGGATTCCAGGAAATCCTGGCCTTCCAGGTCCAAAGGGCGAACCAGGCTTTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCTGGTTCTCCGGGTCCAGCTCTGGAAGGACCTAAAGGCAACCCTGGGCCCCAAGGTCCTCCTGGGAGACCAGGTCCTACAGGTTTTCAAGGTCTACCAGGTCCAGAAGGTCCTCCAGGTCTCCCTGGAAATGGAGGTATTAAAGGAGAGAAGGGAAATCCAGGCCAACCTGGGCTACCTGGCTTGCCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTCCAGGGTAATCCTGGCCGGCCGGGTCTCAATGGAATGAAAGGAGATCCTGGTCTCCCTGGTGTTCCAGGATTCCCAGGCATGAAAGGACCCAGTGGAGTACCTGGATCAGCTGGCCCTGAGGGGGAACCGGGACTTATTGGTCCTCCAGGTCCTCCTGGATTACCTGGTCCTTCAGGACAGAGTATCATAATTAAAGGAGATGCTGGTCCTCCAGGAATCCCTGGCCAGCCTGGGCTAAAGGGTCTACCAGGACCCCAAGGACCTCAAGGCTTACCAGGTCCAACTGGCCCTCCAGGAGATCCTGGACGCAATGGACTCCCTGGCTTTGATGGTGCAGGAGGGCGCAAAGGAGACCCAGGTCTGCCAGGACAGCCAGGTACCCGTGGTTTGGATGGTCCCCCTGGTCCAGATGGATTGCAAGGTCCCCCAGGTCCCCCTGGAACCTCCTCTGTTGCACATGGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACCACAATGCCCACAGGGAACACTTCAGGTCTATGAAGGCTTTTCTCTCCTGTATGTACAAGGAAATAAAAGAGCCCACGGTCAAGACTTGGGGACGGCTGGCAGCTGCCTTCGTCGCTTTAGTACCATGCCTTTCATGTTCTGCAACATCAATAATGTTTGCAACTTTGCTTCAAGAAATGACTATTCTTACTGGCTCTCTACCCCAGAGCCCATGCCAATGAGCATGCAACCCCTAAAGGGCCAGAGCATCCAGCCATTCATTAGTCGATGTGCAGTATGTGAAGCTCCAGCTGTGGTGATCGCAGTTCACAGTCAGACGATCCAGATTCCCCATTGTCCTCAGGGATGGGATTCTCTGTGGATTGGTTATTCCTTCATGATGCATACAAGTGCAGGGGCAGAAGGCTCAGGTCAAGCCCTAGCCTCCCCTGGTTCCTGCTTGGAAGAGTTTCGTTCAGCTCCCTTCATCGAATGTCATGGGAGGGGTACCTGTAACTACTATGCCAACTCCTACAGCTTTTGGCTGGCAACTGTAGATGTGTCAGACATGTTCAGTAAACCTCAGTCAGAAACGCTGAAAGCAGGAGACTTGAGGACACGAATTAGCCGATGTCAAGTGTGCATGAAGAGGACATA</TargetAlignmentSequence>

Design advice for custom painting

Hi,
Can someone give me some high-level design advice on designing a JPanel subclass for custom painting? My panel class is becoming very complex, with lots of drawing and scaling methods, so I'm wondering if I could abstract away some of these graphical elements by creating new classes to make the design more object-oriented. However, I'm finding that there are also disadvantages in representing some of my graphic components as classes. Specifically,
1. It will lead to a much higher level of class coupling. My panel will depend on all these new classes to work correctly. In fact the situation is even worse because my panel is an inner class and, to do some of the scaling, needs to use methods from an object stored in the parent class. I would therefore have to also pass this object reference as an argument to many of these new classes.
2. It will lead to a lot of awkward passing of data between classes. For example, I need to use g2.drawImage(img, x, y, w, h, this), so I will have to pass not only the graphics context but also the panel reference itself.
Is it common for panel subclasses that do custom painting to be complex?
thanks,
Eric

I wrote the map view for a commercial GIS system. Drawing and scaling on a JPanel is challenging, but it need not be complex.
1. To eliminate class coupling, you need to create a couple of interfaces: Renderable (what you want drawn) and Renderer (the thing doing the low-level drawing). Renderer will have before and after setup and reset methods (to do things like scaling and rotation), and methods that the renderables can use to draw graphics. The Renderable interface can be as simple as a single method: draw(Renderer).
Every type of graphic that you draw on the screen would be a different class that implements Renderable, and which knows how to draw itself using whatever lower-level drawing commands you put in the Renderer. If you construct each Renderable in terms of java.awt.Shape, then Renderable.draw() could call a method Renderer.draw(java.awt.Shape, java.awt.Color).
2. The Panel becomes fairly simple. It has a Renderer and a collection of Renderable objects. Its paint() method calls the Renderer setup method, calls Renderable.draw(Renderer) on each object, and calls the Renderer reset method. Each Renderable in turn calls Renderable.draw(java.awt.Shape, java.awt.Color) one or more times.
Renderer should get a Graphics2D from the Panel when the setup method is called. That's when the Renderer does all of the scaling, positioning, and rotation on the Graphics2D. The Renderable implementations shouldn't even need to know about it.
I don't think custom painting code is necessarily complex, merely challenging to write. If you're only drawing a few lines and circles, you probably don't have to be too concerned about design elegance and code maintainability. The map view I designed for our GIS system, on the other hand, has to handle all kinds of map geometry, icons, text, and aerial photos.

Designing a 'sample time feed' for Spry XML Data Set

Hi!
Often when I call a Spry XML Data Set I find I can't get the
schema. If offers you the option to design a sample time feed but
doesn't give you enough info to be able to even guess how to do
this.
Is the answer in modifying that php line somehow?
Any guidance would be much appreciated!
Mike

The idea for Design Time XML is that you can use a static XML
file instead of a dynamic source, in case you don't have access to
the real data. You can use the Design Time XML to make the query
and design the page.
This gives you access to the data references for designing
the page.
If you are getting schema errors, the numbers that the dialog
shows is the line number and character number (1,1)
You should be able to see the XML directly in the browser. If
you can, then DW should be able to consume it.

Require technical advice for designing XML database

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