Rescue workspace from damaged installation?

Hi everyone
I'm having a somewhat unique situation here.
I have been the one who has been installing and using APEX for years now, and everything has been fine. However, we switched hardware architecture a while back (which I wasn't in charge of) and due to that my Apex installation broke since it was just an export / import of the schemas involved (flows_0xxx , apex_0400 , flows files etc) to the new machine and the new database. Fine, I figured I could reinstall it and get it back up running, but i'm having major issues.
I first tried to drop the old apex_040000 schema and reinstall apex, but it gives me errors with several packages being invalid (for example flows_api) and installation is aborted.
I figure I can clean out everything and start over, however I really need to rescue some of my workspaces since there is quite a lot of time spent on some of those.
Is there some way to rescue these workspaces? I have exports of the schemas so the data in the schemas is ok, but Apex doesn't really love imports.
Anyone have any experience with this?
Sincerely
Johnny

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