Resolution Issues in Jpeg Options when Saving

Hi, I am suddenly experiencing an issue when saving Jpeg files in photoshop CS4. I work on hundreds of files at a time. I open the Jpeg photo, edit it and when ready hit 'save' and 'return' to accept the settings which are usually set by default to 12. But recently Photoshop is randomly selecting a lower compression in the Jpeg options when saving. It is only on a few random images though. If I open the original, re-edit the image and save it again, then it usually saves at 12 on the second attempt which is even more strange... Can I lock the settings to by default save all files at level 12 to avoid having to re-edit the shots I happen to miss spotting the change in compression on?
And doesn anyone know what would prompt photoshop to suddenly save certain images in a lower res automatically? I am wasting hours re-editing and double checking files which is very frustrating. Please help!!
Thank you in advance for any asdvice.

Hi Mark, thanks for your reply but the images I'm working on are all shot with the same settings and exported out of iPhoto with the same settings before imported into Photoshop for editing. So they haven't yet been saved in Photoshop. My problem is when I save the file after editing, photoshop is automatically selecting 0 Jpeg image quality rather than 12, which is what it generally selects, except now on these few select images? It's all a bit bizarre because I have used this method for 4 years and now all of a sudden I am having this problem. I assumed I had hit a shortcut somewhere and adjusted the parameters unintentionally. It's rather hard to explain  but I hope that makes more sense. Thanks again to anyone who can help, I'm deseperate to get to the bottom of this....

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