Restored from Time Machine, won't startup from Internal HDD???

I went through a process of erasing my internal HDD, secure erase Mac OS Extended (Journaled), partitioning GUID Partition Table, restored from an external time machine backup, 10.9.1.
After restart, the only drive that boots is the "Base System Restore 10.8". I tried to select the internal disk from the startup disk selection and it doesn't appear. The disk appears in Disk Utility, permissions and disk appear okay. I  also booted from a USB Maverick 10.9.1 disk image and same result.
What am I missing, seemed like I took a pretty straight forward approach.

MetalKaryn wrote:
Once OSX is installed, and I finish this, do I install the combo update?   You mentioned that I will probably have to do that.  Do you know if something will prompt me to let me know that I need to download the combo update?
Check what version of OSX you installed.  It's probably printed on the disc, or click the Apple icon at the left of the menubar, and select About This Mac.  That will display a small window showing, among other things, the version that's running.
If that's not 10.6.6, you'll need to download and install the "combo" to get back to 10.6.6.  You could upgrade to  10.6.8 by getting that one, but it's not necessary.
Reading the link you provided again, do you think it be simpler just to start over and restore from the TC using the SL disc instead of the original MBA instal disc with Leopard?  My mom only has about 25GB of data, so it is not a large database.  Would this type of restore eliminate the combo issue?  I have already gone through the restore about 5 times this weekend!
That might be faster and easier, and no, you wouldn't have to load the combo, since the full restore includes the version of OSX that was backed-up. 
Installing OSX would take roughly 40 minutes, downloading the "combo" varies, of course, but they're close to 1 GB, so, especially if you can connect to the TC via Ethernet, that might be the best option.

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    There could be a few reasons for this.
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    I used to be quite the geek with my PC - still on the learning curve with the mac but not enjoying it.  I am fairly tech savvy and I can follow instructions for a step by step solution if you've got one. 

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    Hello,
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    Hi!
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    That's not the right way to restore. Delete the folder named "Macintosh HD" in the Volumes folder. It will take a very long time.
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  • Restore Mac from Time Machine, after grey screen

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